connectivity mapping
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2022 ◽  
Vol 145 ◽  
pp. 112436
Author(s):  
A.D. Rivera ◽  
F. Pieropan ◽  
G. Williams ◽  
F. Calzolari ◽  
A.M. Butt ◽  
...  

2021 ◽  
Author(s):  
Yu Zhao ◽  
Yurui Gao ◽  
Muwei Li ◽  
Adam W. Anderson ◽  
Zhaohua Ding ◽  
...  

<p>The analysis of connectivity between parcellated regions of cortex provides insights into the functional architecture of the brain at a systems level. However, there has been less progress in the derivation of functional structures from voxel-wise analyses at finer scales. We propose a novel method, called localized topo-connectivity mapping with singular-value-decomposition-informed filtering (or filtered LTM), to identify and characterize voxel-wise functional structures in the human brain using resting-state fMRI data. Here we describe its mathematical background and provide a proof-of-concept using simulated data that allow an intuitive interpretation of the results of filtered LTM. The algorithm has also been applied to 7T fMRI data as part of the Human Connectome Project to generate group-average LTM images. Functional structures revealed by this approach agree moderately well with anatomical structures identified by T<sub>1</sub>-weighted images and fractional anisotropy maps derived from diffusion MRI. Moreover, the LTM images also reveal subtle functional variations that are not apparent in the anatomical structures. To assess the performance of LTM images, the subcortical region and occipital white matter were separately parcellated. Statistical tests were performed to demonstrate that the synchronies of fMRI signals in LTM-informed parcellations are significantly larger than those of random parcellations. Overall, the filtered LTM approach can serve as a tool to investigate the functional organization of the brain at the scale of individual voxels as measured in fMRI.</p>


2021 ◽  
Author(s):  
Yu Zhao ◽  
Yurui Gao ◽  
Muwei Li ◽  
Adam W. Anderson ◽  
Zhaohua Ding ◽  
...  

<p>The analysis of connectivity between parcellated regions of cortex provides insights into the functional architecture of the brain at a systems level. However, there has been less progress in the derivation of functional structures from voxel-wise analyses at finer scales. We propose a novel method, called localized topo-connectivity mapping with singular-value-decomposition-informed filtering (or filtered LTM), to identify and characterize voxel-wise functional structures in the human brain using resting-state fMRI data. Here we describe its mathematical background and provide a proof-of-concept using simulated data that allow an intuitive interpretation of the results of filtered LTM. The algorithm has also been applied to 7T fMRI data as part of the Human Connectome Project to generate group-average LTM images. Functional structures revealed by this approach agree moderately well with anatomical structures identified by T<sub>1</sub>-weighted images and fractional anisotropy maps derived from diffusion MRI. Moreover, the LTM images also reveal subtle functional variations that are not apparent in the anatomical structures. To assess the performance of LTM images, the subcortical region and occipital white matter were separately parcellated. Statistical tests were performed to demonstrate that the synchronies of fMRI signals in LTM-informed parcellations are significantly larger than those of random parcellations. Overall, the filtered LTM approach can serve as a tool to investigate the functional organization of the brain at the scale of individual voxels as measured in fMRI.</p>


BMC Urology ◽  
2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Becky A. S. Bibby ◽  
Niluja Thiruthaneeswaran ◽  
Lingjian Yang ◽  
Ronnie R. Pereira ◽  
Elisabet More ◽  
...  

Abstract Background The presence of hypoxia is a poor prognostic factor in prostate cancer and the hypoxic tumor microenvironment promotes radioresistance. There is potential for drug radiotherapy combinations to improve the therapeutic ratio. We aimed to investigate whether hypoxia-associated genes could be used to identify FDA approved drugs for repurposing for the treatment of hypoxic prostate cancer. Methods Hypoxia associated genes were identified and used in the connectivity mapping software QUADrATIC to identify FDA approved drugs as candidates for repurposing. Drugs identified were tested in vitro in prostate cancer cell lines (DU145, PC3, LNCAP). Cytotoxicity was investigated using the sulforhodamine B assay and radiosensitization using a clonogenic assay in normoxia and hypoxia. Results Menadione and gemcitabine had similar cytotoxicity in normoxia and hypoxia in all three cell lines. In DU145 cells, the radiation sensitizer enhancement ratio (SER) of menadione was 1.02 in normoxia and 1.15 in hypoxia. The SER of gemcitabine was 1.27 in normoxia and 1.09 in hypoxia. No radiosensitization was seen in PC3 cells. Conclusion Connectivity mapping can identify FDA approved drugs for potential repurposing that are linked to a radiobiologically relevant phenotype. Gemcitabine and menadione could be further investigated as potential radiosensitizers in prostate cancer.


Author(s):  
B Al‐ Natour ◽  
R Rankin ◽  
R McKenna ◽  
H McMillan ◽  
SD Zhang ◽  
...  

Author(s):  
Adrien Bertolo ◽  
Mohamed Nouhoum ◽  
Silvia Cazzanelli ◽  
Jeremy Ferrier ◽  
Jean-Charles Mariani ◽  
...  

NeuroImage ◽  
2021 ◽  
Vol 227 ◽  
pp. 117642
Author(s):  
Pan Wang ◽  
Jianlin Wang ◽  
Qin Tang ◽  
Tara L. Alvarez ◽  
Zedong Wang ◽  
...  

2021 ◽  
Author(s):  
Heejoon Choi ◽  
Youngkeun Song ◽  
Wanmo Kang ◽  
James H. Thorne ◽  
Wonkyong Song ◽  
...  

Author(s):  
Jose M. Sanchez-Bornot ◽  
Maria E. Lopez ◽  
Ricardo Bruña ◽  
Fernando Maestu ◽  
Vahab Youssofzadeh ◽  
...  

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