Micropaleontological Assemblages on December-2004 Tsunamigenic Sediments Record of Climate Variation Between Cuddalore and Nagapattinam, East Coast of India

Ninety-nine benthic foraminiferal species belonging to 41 genera, 26 families, 17 superfamilies and 5 suborders have been identified from 84 samples which were collected from beach (23 nos), offshore (24 nos), estuaries (8 nos), inland (23 nos) and one pit sample (6 nos), between Cuddalore and Nagapattinam in the tsunami affected coastal environment. Out of 99 species, only 20 species are living ones. The following species are appreciably distributed in different stations, namely Ammonia beccarii, Elphidiumcrispum, Rosalina globularis, Asterorotaliatrispinosa and Pararotalianipponica. The total distribution of foraminifera is higher at Cuddalore and Nagapattinam whereas at Pudupettai and Samadanpettai it is noticed in the lower order. Organic matter and living species show positive relation. No relationship is observed between dead species and the organic matter, which suggests that the dead species recorded in the sediment, must have been primarily drifted/transported as empty calcareous shells. From the sand/silt/clay ratios, it is inferred that the sediments are normally sandy in nature but silty sand dominates at deeper depths. Carbonate content establishes a positive correlation with all parameters. A fluctuation of salinity values in offshore regions indicates the influx of fresh water from Colleroon river. From the overall studies of foraminiferal distribution in this region, it may be inferred that the species distribution in the offshore region is mainly derived from the inner shelf region. To observe the earlier changes in climactic condition in marine environment mainly based on information from marine sediments. The collected samples from our study area marine sediments contain a variety of foraminifera, which archive climactic information from both planktonic and benthic assemblages and in their sedimentological compositions.

A Brief Report of Five Newly Recorded Korean Modern Benthic Foraminiferal Species

The present study describes five newly recorded modern benthic foraminiferal species from the subtidal zone near Jeju Island and East China Sea (Korea). The newly recorded species (Karrerulina conversa, Rotaliammina trumbulli, Vertebralina striata, Pegidia dubia and Amphistegina radiata) belong to five families (Prolixoplectidae, Trochamminidae, Fischerinidae, Pegidiidae and Amphisteginidae), three orders (Lituolida, Miliolida and Rotaliida) and two classes (Globothalamea and Tubothalamea). All these five genera (Karrerulina, Rotaliammina, Vertebralina, Pegidia and Amphistegina) were also reported for the first time from Korean waters. Most of the examined specimens were highly consistent morphologically with previous records from southern China and Japan. Additionally, Amphistegina is one of the symbiont-bearing larger benthic foraminifera, known to be mainly distributed in tropical to warm subtropical waters. This study contributes to the expansion of data on the recent foraminiferal species diversity in Korean waters.

First report of mitochondrial COI in foraminifera and implications for DNA barcoding

Foraminifera are a species-rich phylum of rhizarian protists that are highly abundant in many marine environments and play a major role in global carbon cycling. Species recognition in Foraminifera is mainly based on morphological characters and nuclear 18S ribosomal RNA barcoding. The 18S rRNA contains variable sequence regions that allow for the identification of most foraminiferal species. Still, some species show limited variability, while others contain high levels of intragenomic polymorphisms, thereby complicating species identification. The use of additional, easily obtainable molecular markers other than 18S rRNA will enable more detailed investigation of evolutionary history, population genetics and speciation in Foraminifera. Here we present the first mitochondrial cytochrome c oxidase subunit 1 (COI) gene sequences (“barcodes”) of Foraminifera. We applied shotgun sequencing to single foraminiferal specimens, assembled COI, and developed primers that allow amplification of COI in a wide range of foraminiferal species. We obtained COI sequences of 49 specimens from 17 species from the orders Rotaliida and Miliolida. Phylogenetic analysis showed that the COI tree is largely congruent with previously published 18S rRNA phylogenies. Furthermore, species delimitation with ASAP and ABGD algorithms showed that foraminiferal species can be identified based on COI barcodes.

16S rRNA Gene Metabarcoding Indicates Species-Characteristic Microbiomes in Deep-Sea Benthic Foraminifera

Foraminifera are unicellular eukaryotes that are an integral part of benthic fauna in many marine ecosystems, including the deep sea, with direct impacts on benthic biogeochemical cycles. In these systems, different foraminiferal species are known to have a distinct vertical distribution, i.e., microhabitat preference, which is tightly linked to the physico-chemical zonation of the sediment. Hence, foraminifera are well-adapted to thrive in various conditions, even under anoxia. However, despite the ecological and biogeochemical significance of foraminifera, their ecology remains poorly understood. This is especially true in terms of the composition and diversity of their microbiome, although foraminifera are known to harbor diverse endobionts, which may have a significant meaning to each species’ survival strategy. In this study, we used 16S rRNA gene metabarcoding to investigate the microbiomes of five different deep-sea benthic foraminiferal species representing differing microhabitat preferences. The microbiomes of these species were compared intra- and inter-specifically, as well as with the surrounding sediment bacterial community. Our analysis indicated that each species was characterized with a distinct, statistically different microbiome that also differed from the surrounding sediment community in terms of diversity and dominant bacterial groups. We were also able to distinguish specific bacterial groups that seemed to be strongly associated with particular foraminiferal species, such as the family Marinilabiliaceae for Chilostomella ovoidea and the family Hyphomicrobiaceae for Bulimina subornata and Bulimina striata. The presence of bacterial groups that are tightly associated to a certain foraminiferal species implies that there may exist unique, potentially symbiotic relationships between foraminifera and bacteria that have been previously overlooked. Furthermore, the foraminifera contained chloroplast reads originating from different sources, likely reflecting trophic preferences and ecological characteristics of the different species. This study demonstrates the potential of 16S rRNA gene metabarcoding in resolving the microbiome composition and diversity of eukaryotic unicellular organisms, providing unique in situ insights into enigmatic deep-sea ecosystems.

Distribution and relative abundance of dominant benthic foraminifera and their palaeoecological significance from beach cores sediment in Kerala coast, India

The study on 365 sediment subsamples have been analyzed for benthic foraminifera from beach cores sediment in Kerala coast, India. The recent benthic foraminiferal faunal record that reveals the paleoecological preferences of the different benthic foraminiferal species are reported in this study. A total of 38 species belonging to 22 genera were identified from the study. For benthic foraminiferal faunal study, dry samples were sieved over 125 μm-size sieve and split into suitable aliquots to obtain ~250 specimens of benthic foraminiferal species identified and counted. The recent benthic foraminiferal faunal record assemblages were dominated by species are Ammonia beccarii followed by Ammonia gaimardii, Cancris oblongus, Discopulvinulina bertheloti, Gyroidinoides nitidula, Gyroidinoides cibaoensis and Quinqueloculina seminulum etc. The most dominant genus like Ammonia was recorded in all the samples from the study. Benthic foraminiferal species are utilized for biostratigraphy for several years and have also been confirmed very constructive in paleoceanographic and paleoclimatological modernization. This study, benthic foraminifera the major contributor to the marine biotic community is largely employed as an important tool for paleoclimatic reconstruction for high fossilization potential and a wide range of geographical distribution.

Protein Extractions from Amphistegina lobifera: Protocol Development and Optimization

Proteins are essential to life, and the evaluation of their content, identification, and modification represents a fundamental assay in biochemistry research. Different analytical techniques and protocols have been specifically designed but have rarely been compared. Here, we test and compare a variety of methodologies and treatments for the quantification of proteins in Amphistegina lessonii, a larger symbiont-bearing benthic foraminiferal species. These analyses specifically include (a) lysis buffer (homemade vs. RIPA), (b) protein assays (Lowry, BCA, and Bradford), (c) ultrasonic bath treatment, and (d) protein staining (silver staining vs. Coomassie blue). On the basis of the comparative outcome, we suggest using the homemade lysis buffer, Lowry or BCA assays, ultrasonic bath treatment, and silver stain to maximize the extraction and characterization of protein for A. lessonii. This protocol might be suitable and extended to other benthic foraminiferal species, including the smaller ones.