structural fluctuation
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2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Matthew E. McKenzie ◽  
Binghui Deng ◽  
D. C. Van Hoesen ◽  
Xinsheng Xia ◽  
David E. Baker ◽  
...  

AbstractNucleation is generally viewed as a structural fluctuation that passes a critical size to eventually become a stable emerging new phase. However, this concept leaves out many details, such as changes in cluster composition and competing pathways to the new phase. In this work, both experimental and computer modeling studies are used to understand the cluster composition and pathways. Monte Carlo and molecular dynamics approaches are used to analyze the thermodynamic and kinetic contributions to the nucleation landscape in barium silicate glasses. Experimental techniques examine the resulting polycrystals that form. Both the modeling and experimental data indicate that a silica rich core plays a dominant role in the nucleation process.


Molecules ◽  
2021 ◽  
Vol 26 (2) ◽  
pp. 271
Author(s):  
Masatake Sugita ◽  
Itaru Onishi ◽  
Masayuki Irisa ◽  
Norio Yoshida ◽  
Fumio Hirata

There are two molecular processes that are essential for living bodies to maintain their life: the molecular recognition, and the self-organization or self-assembly. Binding of a substrate by an enzyme is an example of the molecular recognition, while the protein folding is a good example of the self-organization process. The two processes are further governed by the other two physicochemical processes: solvation and the structural fluctuation. In the present article, the studies concerning the two molecular processes carried out by Hirata and his coworkers, based on the statistical mechanics of molecular liquids or the RISM/3D-RISM theory, are reviewed.


2019 ◽  
Vol 58 (SL) ◽  
pp. SLLA06 ◽  
Author(s):  
Shota Noda ◽  
Yuto Yokoi ◽  
Yuki Nakahira ◽  
Tomohiro Abe ◽  
Ichiro Fujii ◽  
...  

2018 ◽  
Vol 98 (13) ◽  
Author(s):  
S. Torigoe ◽  
T. Hattori ◽  
K. Kodama ◽  
T. Honda ◽  
H. Sagayama ◽  
...  

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