Intraspecies multiple chromosomal variations including rare tandem fusion in the Russian Far Eastern endemic evoron vole Alexandromys evoronensis (Rodentia, Arvicolinae)

The vole Alexandromys evoronensis (Kovalskaya et Sokolov, 1980) with its two chromosomal races, “Evoron” (2n = 38–41, NF = 54–59) and “Argi” (2n = 34, 36, 37, NF = 51–56) is the endemic vole found in the Russian Far East. For the “Argi” chromosomal race, individuals from two isolated populations in mountain regions were investigated here for the first time using GTG-, GTC-, NOR methods. In the area under study, 8 new karyotype variants have been registered. The karyotype with 2n = 34 has a rare tandem fusion of three autosomes: two biarmed (Mev6 and Mev7) and one acrocentric (Mev14) to form a large biarmed chromosome (Mev6/7/14), all of which reveal a heterozygous state. For A. evoronensis, the variation in the number of chromosomes exceeded the known estimate of 2n = 34, 36 and amounted to 2n = 34, 36, 38–41. The combination of all the variations of chromosomes for the species made it possible to describe 20 variants of the A. evoronensis karyotype, with 11 chromosomes being involved in multiple structural rearrangements. In the “Evoron” chromosomal race 4 chromosomes (Mev1, Mev4, Mev17, and Mev18) and in the “Argi” chromosomal race 9 chromosomes (Mev6, Mev7, Mev14, Mev13, Mev11, Mev15, Mev17, Mev18, and Mev19) were observed. Tandem and Robertsonian rearrangements (Mev17/18 and Mev17.18) were revealed in both chromosomal races “Evoron” and “Argi”.

DNA transposon expansion is associated with genome size increase in mudminnows

Genome sizes of eukaryotic organisms vary substantially, with whole genome duplications (WGD) and transposable element expansion acting as main drivers for rapid genome size increase. The two North American mudminnows, Umbra limi and U. pygmaea, feature genomes about twice the size of their sister lineage Esocidae (e.g., pikes and pickerels). However, it is unknown whether all Umbra species share this genome expansion and which causal mechanisms drive this expansion. Using flow cytometry, we find that the genome of the European mudminnow is expanded similarly to both North American species, ranging between 4.5-5.4 pg per diploid nucleus. Observed blocks of interstitially located telomeric repeats in Umbra limi suggest frequent Robertsonian rearrangements in its history. Comparative analyses of transcriptome and genome assemblies show that the genome expansion in Umbra is driven by the expansion of DNA transposon and unclassified repeat sequences without WGD. Furthermore, we find a substantial ongoing expansion of repeat sequences in the Alaska blackfish Dallia pectoralis, the closest relative to the family Umbridae, which might mark the beginning of a similar genome expansion. Our study suggests that the genome expansion in mudminnows, driven mainly by transposon expansion, but not WGD, occurred before the separation into the American and European lineage.

Features of the chromosome set of representatives of smoothnosed bats of the North Caucasus

Aim. The aim of this work was to study the chromosome set of some representatives of smooth-nosed bats of the North Caucasus.Material and Methods. Various research methods were used to achieve this goal, including that of dried preparations (the main method for obtaining chromosomal preparations) and that of constructing karyograms.Results. A comparative analysis of the karyological data of 11 species of smooth-nosed bats of the North Caucasus was undertaken and the karyological characteristics of the species accepted in the latest reports on the fauna of Russia and the Caucasus were clarified. The similarity of G -bands in large pairs of meta- and submetacentric chromosomes in Myotis blythi, Myotis mystacinus, Pipistrellus pipistrellus, Pipistrellus kuhli and Vepertilio murinus with bands in small and medium-sized acrocentric chromosomes such as in Eptesicus seotinus may indicate the evolution of the karyotype of the first species by Robertsonian translocation, i.e. compounds of acrocentric chromosomes of Eptesicus serotinus in various combinations. When comparing karyotypes in the family Vespertilionidae, it was found that the karyotype of Eptesicus serotinus is "archaic" (2n=50, NFa=48). With the help of karyological data, the authors composed schemes of phylogenetic relationships of genera in the family Vespertilionidae, which differ to a certain extent from the schemes compiled by taxonomists for representatives of this family.Conclusions. Based on the results obtained, we can conclude that the karyotype of Eptesicus serotinus is the most primitive among the representatives of the order of bats. The primary role in the evolution of this group was played by Robertsonian rearrangements and pericentric inversions (reduction of NFa and 2n from 50 to 38).

DNA transposon expansion is associated with genome size increase in mudminnows

Genome sizes of eukaryotic organisms vary substantially, with whole genome duplications (WGD) and transposable element expansion acting as main drivers for rapid genome size increase. The two North American mudminnows, Umbra limi and U. pygmaea, feature genomes about twice the size of their sister lineage Esocidae (e.g., pikes and pickerels). However, it is unknown whether all Umbra species share this genome expansion and which causal mechanisms drive this expansion. Using flow cytometry, we find that the genome of the European mudminnow is expanded similarly to both North American species, ranging between 4.5-5.4 pg per diploid nucleus. Observed blocks of interstitially located telomeric repeats in Umbra limi suggest frequent Robertsonian rearrangements in its history. Comparative analyses of transcriptome and genome assemblies show that the genome expansion in Umbra is driven by extensive DNA transposon expansion without WGD. Furthermore, we find a substantial ongoing expansion of repeat sequences in the Alaska blackfish Dallia pectoralis, the closest relative to the family Umbridae, which might mark the beginning of a similar genome expansion. Our study suggests that the genome expansion in mudminnows, driven mainly by transposon expansion, but not WGD, occurred before the separation into the American and European lineage.

High congruence of karyotypic and molecular data on Hypostomus species from the Paraná River basin

ABSTRACTThe Hypostomini tribe comprises a single genus, Hypostomus, which possibly contains several monophyletic groups because of significant morphological variation and a variety of diploid numbers and karyotype formulas. The objective of this study was to infer evolutionary relationships among some species of Hypostomus found in the Paraná River basin and subsequently to identify chromosomal synapomorphies in the groupings formed. Two nuclear genes, rag1 and rag2, and two mitochondrial genes, mt-co1 and mt-cyb, were used to establish evolutionary relationships. Phylogenetic trees were inferred using the maximum likelihood (ML) method for mt-co1 and Bayesian analysis (BA) for all genes concatenated. Both phylogenetic trees showed two large monophyletic clades within Hypostomus. These clades are based on chromosome number, where haplogroup I contains individuals with 66–68 chromosomes, and haplogroup II contains species with 72–80 chromosomes. A third monophyletic haplogroup was also observed using ML, formed by H. faveolus and H. cochliodon, which present 2n = 64, reinforcing the separation of groups in Hypostomus by diploid number. Robertsonian rearrangements were responsible for forming the different diploid numbers and for the diversity of karyotype formulas. The groups based on traditional morphological taxonomy are considered artificial in this study; the staining pattern, which separates the two large groups morphologically and is supported by little chromosomal evidence, was instead determined to show homoplasy. Ag-NORs are predominantly multiple and located on st/a chromosomes, along with 18S rDNA sites; 5S rDNA sites are often seen in an interstitial position, following the trend already described for vertebrates.

Comparative cytogenetics of four species of Thrichomys (Rodentia: Echimyidae)

Thrichomys Trouessart, 1880 is a genus of echimyid rodents endemic to South America, distributed from northeastern Brazil to Paraguay and Bolivia. Although all the recognized species of this genus have already been karyotyped, detailed comparative cytogenetic analyses have not been performed yet. We karyologically analyzed four species of Thrichomys from different Brazilian states. Our analyses included GTG- and CBG-banding, silver-staining of the nucleolar organizer regions (Ag-NORs), and fluorescent in situ hybridization (FISH) with telomeric and 45S rDNA probes. Comparative GTG-banding suggested that the interspecific variation may result from Robertsonian rearrangements, pericentric and paracentric inversions, centromere repositioning, and heterochromatin variation. FISH with a telomeric probe showed interspecies variation in interstitial telomeric sequences (ITs) distribution. Our results represent the most complete data on the cytogenetics of Thrichomys reported to date and give an insight into the chromosome evolution of this genus.

Comparative Genomic In Situ Hybridization and the Possible Role of Retroelements in the Karyotypic Evolution of Three Akodontini Species

South American Akodontini rodents are characterized by a large number of chromosome rearrangements. Among them, the genus Akodon has been extensively analyzed with classical and molecular cytogenetics, which allowed the identification of a large number of intra- and interspecific chromosomal variation due to Robertsonian rearrangements, pericentric inversions, and heterochromatin additions/deletions. In order to shed some light on the cause of these rearrangements, we comparatively analyzed the karyotypes of three Akodontini species, Akodon cursor (2n = 14, FN = 19), A. montensis (2n = 24, FN = 42), and Necromys lasiurus (2n = 34, FN = 34), after GTG- and CBG-banding. The karyotypes differed by Robertsonian rearrangements, pericentric inversions, centromere repositioning, and heterochromatin variation. Genome comparisons were performed through interspecific fluorescent in situ hybridization (FISH) with total genomic DNAs of each species as probes (GISH). Our results revealed considerable conservation of the euchromatic portions among the three karyotypes suggesting that they mostly differ in their heterochromatic regions. FISH was also performed to assess the distribution of telomeric sequences, long and short interspersed repetitive elements (LINE-1 and B1 SINE) and of the endogenous retrovirus mysTR in the genomes of the three species. The results led us to infer that transposable elements have played an important role in the enormous chromosome variation found in Akodontini.

Gene flow despite complex Robertsonian fusions among rock-wallaby ( Petrogale ) species

Complex Robertsonian rearrangements, with shared arms in different fusions, are expected to prevent gene flow between hybrids through missegregation during meiosis. Here, we estimate gene flow between recently diverged and chromosomally diverse rock-wallabies ( Petrogale ) to test for this form of chromosomal speciation. Contrary to expectations, we observe relatively high admixture among species with complex fusions. Our results reinforce the need to consider alternative roles of chromosome change, together with genic divergence, in driving speciation.