Genomic Evidence for Sequestration of Influenza A Virus Lineages in Sea Duck Host Species

Wild birds are considered the natural reservoir of influenza A viruses (IAVs) making them critical for IAV surveillance efforts. While sea ducks have played a role in novel IAV emergence events that threatened food security and public health, very few surveillance samples have been collected from sea duck hosts. From 2014–2018, we conducted surveillance focused in the Mississippi flyway, USA at locations where sea duck harvest has been relatively successful compared to our other sampling locations. Our surveillance yielded 1662 samples from sea ducks, from which we recovered 77 IAV isolates. Our analyses identified persistence of sea duck specific IAV lineages across multiple years. We also recovered sea duck origin IAVs containing an H4 gene highly divergent from the majority of North American H4-HA with clade node age of over 65 years. Identification of IAVs with long branch lengths is indicative of substantial genomic change consistent with persistence without detection by surveillance efforts. Sea ducks play a role in the movement and long-term persistence of IAVs and are likely harboring more undetected IAV diversity. Sea ducks should be a point of emphasis for future North American wild bird IAV surveillance efforts.

The pathogenesis of a North American H5N2 clade 2.3.4.4 group A highly pathogenic avian influenza virus in surf scoters (Melanitta perspicillata)

Background Aquatic waterfowl, particularly those in the order Anseriformes and Charadriiformes, are the ecological reservoir of avian influenza viruses (AIVs). Dabbling ducks play a recognized role in the maintenance and transmission of AIVs. Furthermore, the pathogenesis of highly pathogenic AIV (HPAIV) in dabbling ducks is well characterized. In contrast, the role of diving ducks in HPAIV maintenance and transmission remains unclear. In this study, the pathogenesis of a North American A/Goose/1/Guangdong/96-lineage clade 2.3.4.4 group A H5N2 HPAIV, A/Northern pintail/Washington/40964/2014, in diving sea ducks (surf scoters, Melanitta perspicillata) was characterized. Results Intrachoanal inoculation of surf scoters with A/Northern pintail/Washington/40964/2014 (H5N2) HPAIV induced mild transient clinical disease whilst concomitantly shedding high virus titers for up to 10 days post-inoculation (dpi), particularly from the oropharyngeal route. Virus shedding, albeit at low levels, continued to be detected up to 14 dpi. Two aged ducks that succumbed to HPAIV infection had pathological evidence for co-infection with duck enteritis virus, which was confirmed by molecular approaches. Abundant HPAIV antigen was observed in visceral and central nervous system organs and was associated with histopathological lesions. Conclusions Collectively, surf scoters, are susceptible to HPAIV infection and excrete high titers of HPAIV from the respiratory and cloacal tracts whilst being asymptomatic. The susceptibility of diving sea ducks to H5 HPAIV highlights the need for additional research and surveillance to further understand the contribution of diving ducks to HPAIV ecology.

First Report of Scoters (Melanitta spp.) along Eastern Baffin Island, Nunavut, Canada

In September of 2017 and 2018, we observed hundreds of scoters (Melanitta spp.) in fiords in Arctic Canada, approximately 1100 – 1800 km north of their previous northernmost observations. Given the remote locations and timing of observations, we do not know if these represent previously undiscovered areas where birds moult or new movements to Arctic locations. Moreover, the provenance of these sea ducks is unclear, as no evidence of movements to this region was indicated by large-scale satellite tracking of North American scoters during the last decade.

An invasive alien bivalve apparently provides a novel food source for moulting and wintering benthic feeding sea ducks

Since its introduction from North America in the 1970s, the American razor clam Ensis leei (M. Huber, 2015) has successfully spread throughout North Sea coasts from Spain to Norway and the United Kingdom to the western Baltic. We investigated the distribution and abundance of this non-indigenous bivalve species as a potential novel food resource for common scoter Melanitta nigra (Linnaeus, 1758) along the eastern German North Sea coast. Highest densities of flightless moulting and wintering common scoters coincided with areas of high E. leei abundance. Other European studies showed common scoters extensively feed on E. leei. Even with these findings, it remains difficult to demonstrate convincingly that E. leei constitutes a major food source for common scoter in the German North Sea during their non-breeding season. However, our study suggests that E. leei has become an important prey item for internationally important concentrations of common scoters at large spatial scales.