Genomic Evidence for Sequestration of Influenza A Virus Lineages in Sea Duck Host Species

Wild birds are considered the natural reservoir of influenza A viruses (IAVs) making them critical for IAV surveillance efforts. While sea ducks have played a role in novel IAV emergence events that threatened food security and public health, very few surveillance samples have been collected from sea duck hosts. From 2014–2018, we conducted surveillance focused in the Mississippi flyway, USA at locations where sea duck harvest has been relatively successful compared to our other sampling locations. Our surveillance yielded 1662 samples from sea ducks, from which we recovered 77 IAV isolates. Our analyses identified persistence of sea duck specific IAV lineages across multiple years. We also recovered sea duck origin IAVs containing an H4 gene highly divergent from the majority of North American H4-HA with clade node age of over 65 years. Identification of IAVs with long branch lengths is indicative of substantial genomic change consistent with persistence without detection by surveillance efforts. Sea ducks play a role in the movement and long-term persistence of IAVs and are likely harboring more undetected IAV diversity. Sea ducks should be a point of emphasis for future North American wild bird IAV surveillance efforts.

Use of genetic mark-recapture to estimate breeding site fidelity and philopatry in a threatened sea duck population, Alaska-breeding Steller’s eiders

The Steller’s eider Polysticta stelleri is a sea duck that breeds in Arctic tundra regions of Russia and Alaska (USA). The Alaska-breeding population is listed as ‘threatened’ under the US Endangered Species Act because of a perceived contraction of the breeding range in North America. Understanding demography of the listed population is critical for evaluating measures that can lead to increased abundance and thus, long-term viability. Specifically, estimates of return rates to breeding areas by adult females and natal areas by juvenile females are needed for planning effective recovery actions. We used a suite of polymorphic loci to genotype individuals and generated genetic profiles of nesting females and female offspring from nest materials collected between 1995 and 2016 in a ~170 km2 study area near Utqiagvik, Alaska. We analyzed capture histories of genetically identified individuals to estimate breeding site fidelity, temporary emigration, and philopatry. From a sample of 365 nests, we found that breeding site fidelity of adult females was high (0.91 ± 0.07 SE), and temporary emigration was also high (0.77 ± 0.06) and annually variable (range 0.34-0.97). From egg shell remains of 124 hatched females, we observed 9 recaptures as nesting adults, suggesting that philopatry was also high (range 0.6-1.0). Given the relatively high rates of adult female breeding site fidelity and female philopatry that we estimated, management actions that reduce mortality of adult females and increase annual productivity are likely to help maintain the population of a few hundred breeding Steller’s eiders on the Arctic Coastal Plain of Alaska.

Body and organ mass dynamics during remigial moult in a wing–foot-propelled diving sea duck: the Common Eider (Atlantic) (Somateria mollissima dresseri)

Body and organ dynamics, during remigial moult, have been mainly explored on geese, dabbling ducks, and foot-propelled diving ducks, but weakly on sea ducks. This study investigated the internal changes in a wing–foot-propelled sea duck to determine the adaptive strategies implemented. Forty-five male Common Eiders (Atlantic) (Somateria mollissima dresseri Sharpe, 1871), collected in the Gulf of St. Lawrence, were dissected; their body mass, muscle mass, and organ sizes were measured. We tested three hypotheses: (1) S. m. dresseri use a strategic reduction of body mass to reduce the flightlessness duration; (2) organs will exhibit changes consistent with a trade-off between function and maintenance to save and reallocate energy and proteins to feather growth; (3) S. m. dresseri would show lower flight muscle reduction than foot-propelled diving ducks. Somateria mollissima dresseri did not lose body mass, which does not support the first hypothesis. Atrophy of the heart followed by hypertrophy and opposite changes in leg muscle mass and gizzard mass are consistent with the second hypothesis. Flight muscle mass showed lower variations than in other ducks, validating the third hypothesis. We also suggest that the lipid depletion observed early in the moult could be a strategy to reduce foraging effort and minimize the risk of damaging the growing feathers.