genetic homogeneity
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2021 ◽  
Author(s):  
◽  
Céline Marie Olivia Reisser

<p>The conventional view that marine populations are demographically ‘open’ and exchange migrants (juveniles or adults, but mostly larvae) has been challenged by recent genetic studies and the discovery of significant genetic subdivision among populations on small geographic scales. Despite the numerous publications on the matter, the extent to which some/all marine populations rely on self-recruitment and whether this reliance is stable in time and space currently remains unanswered. This is particularly true for populations from isolated oceanic archipelagos, such as the New Zealand (NZ) subantarctic islands and the Kermadec Islands. The specific objectives of this thesis were to: 1) assess the genetic diversity, phylogeography and contemporary levels of dispersal and self-recruitment in populations of the Cellana strigilis limpet complex, endemic to the NZ subantarctic islands; 2) conduct a morphometric analysis of the C. strigilis complex to complement its molecular investigation; 3) develop and optimize specific microsatellite markers for Nerita melanotragus, a marine gastropod of the Kermadec Islands and New Zealand North Island rocky shores; 4) assess the genetic structuring and levels of connectivity of N. melanotragus populations within the Kermadec Islands, within NZ North Island, and between the Kermadec Islands and NZ; and 5) compare the genetic structuring of N. melanotragus at the Kermadec Islands to that of NZ North Island populations, to test for any “island effect” on connectivity levels, and test for possible gene flow between the two groups. Genetic investigation of the C. strigilis complex confirmed the presence of two distinct lineages, separated by their sister species Cellana denticulata. Morphometric analyses were congruent with molecular analyses, and were used to provide a new taxonomic description of the C. strigilis limpet complex: two species were recognized, Cellana strigilis and Cellana oliveri. The role of the subantarctic islands during the last glacial maximum was highlighted, and the colonisation history of the islands by the two Cellana species was explained. Contemporary levels of connectivity (gene flow) among the different populations of the two lineages were low, or non-existant, revealing their high reliability on self-recruitment. However, the analysis detected a recent migration event in one of the two lineages. Considering the geographical distance of the islands and the life history of the Cellana species, the use of mediated dispersal means (e.g., rafting on a natural substrate such as kelp) seems very likely. Ten novel polymorphic microsatellite loci were developed for N. melanotragus, and seven of those were used to investigate the levels of connectivity and self-recruitment in six populations from the Kermadec Islands, and nine populations from the east coast of NZ North Island. According to what can be expected for a species with a long pelagic larval duration (PLD), genetic homogeneity was recorded for the Kermadec Islands populations. A lack of genetic structuring was also found for the nine populations on the NZ North Island, which is congruent with the literature in this geographic area. However, what was surprising was the high level of genetic homogeneity found between the Kermadec Islands and the NZ North Island, meaning that the two groups are effectively exchanging individuals. Hence, the Kermadec archipelago can be considered “open” at the scale of the South Pacific, for N. melanotragus populations. This Ph.D. highlights the importance of having the correct taxonomy for conservation and connectivity studies, and gives a better understanding of the historical and contemporary patterns of genetic connectivity in the NZ offshore islands. It illustrated how historical events, such as the last glacial maximum, can shape local genetic diversity, and how this historical pattern can be maintained because of limited contemporary gene exchange. Also, this thesis demonstrated that remote populations could be strongly connected to mainland populations, contributing to the resilience of both systems and confirming the necessity of integrating remote oceanic habitats in the creation of effective Marine Protected Areas (MPA) networks to protect the marine environment.</p>


2021 ◽  
Author(s):  
◽  
Céline Marie Olivia Reisser

<p>The conventional view that marine populations are demographically ‘open’ and exchange migrants (juveniles or adults, but mostly larvae) has been challenged by recent genetic studies and the discovery of significant genetic subdivision among populations on small geographic scales. Despite the numerous publications on the matter, the extent to which some/all marine populations rely on self-recruitment and whether this reliance is stable in time and space currently remains unanswered. This is particularly true for populations from isolated oceanic archipelagos, such as the New Zealand (NZ) subantarctic islands and the Kermadec Islands. The specific objectives of this thesis were to: 1) assess the genetic diversity, phylogeography and contemporary levels of dispersal and self-recruitment in populations of the Cellana strigilis limpet complex, endemic to the NZ subantarctic islands; 2) conduct a morphometric analysis of the C. strigilis complex to complement its molecular investigation; 3) develop and optimize specific microsatellite markers for Nerita melanotragus, a marine gastropod of the Kermadec Islands and New Zealand North Island rocky shores; 4) assess the genetic structuring and levels of connectivity of N. melanotragus populations within the Kermadec Islands, within NZ North Island, and between the Kermadec Islands and NZ; and 5) compare the genetic structuring of N. melanotragus at the Kermadec Islands to that of NZ North Island populations, to test for any “island effect” on connectivity levels, and test for possible gene flow between the two groups. Genetic investigation of the C. strigilis complex confirmed the presence of two distinct lineages, separated by their sister species Cellana denticulata. Morphometric analyses were congruent with molecular analyses, and were used to provide a new taxonomic description of the C. strigilis limpet complex: two species were recognized, Cellana strigilis and Cellana oliveri. The role of the subantarctic islands during the last glacial maximum was highlighted, and the colonisation history of the islands by the two Cellana species was explained. Contemporary levels of connectivity (gene flow) among the different populations of the two lineages were low, or non-existant, revealing their high reliability on self-recruitment. However, the analysis detected a recent migration event in one of the two lineages. Considering the geographical distance of the islands and the life history of the Cellana species, the use of mediated dispersal means (e.g., rafting on a natural substrate such as kelp) seems very likely. Ten novel polymorphic microsatellite loci were developed for N. melanotragus, and seven of those were used to investigate the levels of connectivity and self-recruitment in six populations from the Kermadec Islands, and nine populations from the east coast of NZ North Island. According to what can be expected for a species with a long pelagic larval duration (PLD), genetic homogeneity was recorded for the Kermadec Islands populations. A lack of genetic structuring was also found for the nine populations on the NZ North Island, which is congruent with the literature in this geographic area. However, what was surprising was the high level of genetic homogeneity found between the Kermadec Islands and the NZ North Island, meaning that the two groups are effectively exchanging individuals. Hence, the Kermadec archipelago can be considered “open” at the scale of the South Pacific, for N. melanotragus populations. This Ph.D. highlights the importance of having the correct taxonomy for conservation and connectivity studies, and gives a better understanding of the historical and contemporary patterns of genetic connectivity in the NZ offshore islands. It illustrated how historical events, such as the last glacial maximum, can shape local genetic diversity, and how this historical pattern can be maintained because of limited contemporary gene exchange. Also, this thesis demonstrated that remote populations could be strongly connected to mainland populations, contributing to the resilience of both systems and confirming the necessity of integrating remote oceanic habitats in the creation of effective Marine Protected Areas (MPA) networks to protect the marine environment.</p>


Author(s):  
Jayabalan Shilpha ◽  
Subramani Pandian ◽  
Muthiah Joe Virgin Largia ◽  
Soo In Sohn ◽  
Manikandan Ramesh

2021 ◽  
Vol 88 (3) ◽  
Author(s):  
A.A. Amangeldiyeva ◽  
A.M. Abekova ◽  
R.S. Yerzhebayeva

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Rocío Pérez-Portela ◽  
Alex Garcia-Cisneros ◽  
Marta Campos-Canet ◽  
Creu Palacín

Abstract We here analysed the populations’ genetic structure of Coscinasterias tenuispina, an Atlantic-Mediterranean fissiparous starfish, focusing on the western Mediterranean, to investigate: the distribution and prevalence of genetic variants, the relative importance of asexual reproduction, connectivity across the Atlantic-Mediterranean transition, and the potential recent colonisation of the Mediterranean Sea. Individuals from 11 Atlantic-Mediterranean populations of a previous study added to 172 new samples from five new W Mediterranean sites. Individuals were genotyped at 12 microsatellite loci and their gonads histologically analysed for sex determination. Additionally, four populations were genotyped at two-time points. Results demonstrated genetic homogeneity and low clonal richness within the W Mediterranean, due to the dominance of a superclone, but large genetic divergence with adjacent areas. The lack of new genotypes recruitment over time, and the absence of females, confirmed that W Mediterranean populations were exclusively maintained by fission and reinforced the idea of its recent colonization. The existence of different environmental conditions among basins and/or density-depend processes could explain this lack of recruitment from distant areas. The positive correlation between clonal richness and heterozygote excess suggests that most genetic diversity is retained within individuals in the form of heterozygosity in clonal populations, which might increase their resilience.


2021 ◽  
Vol 8 (1) ◽  
pp. 57-67
Author(s):  
Devit Purwoko ◽  
Teuku Tajuddin ◽  
. Pramono ◽  
. Rismayanti ◽  
Muhamad Farkhan Yanuar ◽  
...  

Analysis of the Genetic Homogeneity of Apple (Malus spp.) Clones Propagated by Ex Vitro Culture Based on SSR Markers Propagation of apple plants (Malus spp.) vegetatively has the advantage of genetic homogeneity between clones and their parents. However, the possibility of cytological and off-type deviations persists during mass propagation. This study aims to analyze the genetic homogeneity of apple plants using SSR markers in ex vitro propagation techniques. Morphological observations between the parental plant and the ex vitro propagation derived clones and also among themselves did not show any differences. To analyze the genetic heterogeneity of these plants, 15 SSR primers were screened on 29 propagation clones of apple var. Anna and Manalagi. Genetic characters were scored for group analysis using Darwin 6.05. Eight SSR primers (IPA 2, IPA 3, IPA 4, 5 PA, 6 PA, 12 PA, 13 PA, and 14 PA) produced 82 clear and easily visible bands in the size range of 90-365 bp. This study successfully detected the uniformity of all band patterns from the plant samples. The SSR markers could be used to analyze the genetic stability of the ex vitro propagation of apple clones. Perbanyakan tanaman apel (Malus spp.) secara vegetatif memiliki keunggulan homogenitas genetik antara klon dengan induknya. Namun kemungkinan terjadi penyimpangan sitologi dan off type tetap ada saat perbanyakan massal. Penelitian ini bertujuan untuk menguji homogenitas genetik tanaman apel menggunakan penanda SSR pada teknik perbanyakan ex vitro. Pengamatan secara morfologi antara tanaman induk dengan hasil perbanyakan secara ex vitro dan dengan sesamannya tidak menunjukkan perbedaan. Untuk menganalisis homogenitas genetik tanaman ini kami menyaring 15 primer SSR pada 29 klon perbanyakan tanaman apel varietas Anna dan Manalagi. Karakter genetik dihitung untuk analisis kelompok menggunakan Darwin 6.05. Sebanyak 8 primer SSR (IPA 2, IPA 3, IPA 4, 5 PA, 6 PA, 12 PA, 13 PA, dan 14 PA) menghasilkan 82 pita yang jelas dan mudah terlihat dalam kisaran ukuran 90-365 bp. Studi ini juga berhasil mendeteksi keseragaman pola pita semua sampel tanaman. Penanda SSR dapat digunakan untuk analisis stabilitas genetik perbanyakan ex vitro dari tanaman apel.


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