Song divergence indicates an unclear relationship between the Neotropical and Nearctic Horned Larks

Background Some studies have indicated that the Horned Larks (Eremophila alpestris) should be considered as a species complex. Recently it split into four species or clades and seven subclades based on genetic, morphological, and biogeographic data. However, other aspects like song divergence have not been studied and several subspecies have not been evaluated, leading to important information gaps in this group of birds. In this work, we aimed to assess the differences in song traits and playback response between the Nearctic subclade and the Neotropical or Colombian subspecies E. a. peregrina. Methods We compared six song traits between these groups and performed field playback experiments, to test the response of the Neotropical larks to both songs. We tested the difference in the variables for separate as well as by principal component analysis (PCA). Results We found significant differences (p < 0.05) in the individual song traits and the PCA analysis between the two groups. Further, the PCA analysis showed a clearer divergence of the Neotropical songs in comparison to the Nearctic songs of different locations within North America. Similarly, the playback analysis showed a significantly lower response of E. a. peregrina to the songs of the Nearctic larks. Conclusions Besides this song divergence, there are important ecological and biogeographic differences between the Neotropical and Nearctic Horned Larks, that indicate an unclear relationship between these two groups. Thus, further morphological and genetic studies are required to clarify the taxonomy of the Neotropical Horned Lark and define if they share the same evolutionary history as the other subspecies of the Nearctic subclade.

The First Record of Horned Lark from Jigme Khesar Strict Nature Reserve – A New Record for Bhutan

The Horned Lark (Eremophila alpestris) even though a widespread songbird species had not been recorded from Bhutan. The bird was observed in Jigme Khesar Strict Nature Reserve in a recent trip to Gakiling, Haa. With this new record, the number of bird species found in Bhutan has increased to 739 species.

Plumage patterns: Ecological functions, evolutionary origins, and advances in quantification

Birds exhibit remarkable variation in plumage patterns, both within individual feathers and among plumage patches. Differences in the size, shape, and location of pigments and structural colors comprise important visual signals involved in mate choice, social signaling, camouflage, and many other functions. While ornithologists have studied plumage patterns for centuries, recent technological advances in digital image acquisition and processing have transformed pattern quantification methods, enabling comprehensive, detailed datasets of pattern phenotypes that were heretofore inaccessible. In this review, we synthesize recent and classic studies of plumage patterns at different evolutionary and organismal scales and discuss the various roles that plumage patterns play in avian biology. We dissect the role of plumage patches as signals within and among species. We also consider the evolutionary history of plumage patterns, including phylogenetic comparative studies and evolutionary developmental research of the genetic architecture underlying plumage patterns. We also survey an expanding toolbox of new methods that characterize and quantify the size, shape, and distribution of plumage patches. Finally, we provide a worked example to illustrate a potential workflow with dorsal plumage patterns among subspecies of the Horned Lark (Eremophila alpestris) in western North America. Studies of plumage patterning and coloration have played a prominent role in ornithology thus far, and recent methodological and conceptual advances have opened new avenues of research on the ecological functions and evolutionary origins of plumage patterns in birds.

Timing and intensity of weather events shape nestling development strategies in three alpine breeding songbirds

Across taxa, offspring size traits are linked to survival, and life-time fitness. Inclement weather can be a major constraint on offspring growth and parental care. Despite the adaptive benefits of larger offspring, we have a limited understanding of the effects of severe environmental conditions across developmental stages and how coping strategies differ among species. We assessed the influence of inclement weather on offspring size and mass traits within populations of three alpine breeding songbirds in British Columbia: (1) horned lark (Eremophila alpestris) (2) dark-eyed junco (Junco hyemalis), and (3) savannah sparrow (Passerculus sandwichensis). Specifically, we investigated at which stages during early-life development offspring are most vulnerable to inclement weather and whether thresholds exist in the developmental response to severe weather events. Across species, we identified two critical periods that best predicted offspring size: (1) clutch initiation, and (2) the nestling stage. Colder temperatures experienced by the female during clutch initiation were associated with larger, heavier offspring in horned larks but smaller offspring for savannah sparrows, indicating the potential for maternal effects, albeit acting through different mechanisms. Additionally, horned lark offspring were resilient to colder average temperatures during the nestling stage but were vulnerable to extreme cold events and multi-day storms. In contrast, dark-eyed junco nestlings were robust to storms, but smaller size and mass traits were associated with lower daily maximum temperatures (i.e., more mild temperature challenges). We suggest species differences may be linked to life-history traits, such as: (1) the thermoregulatory benefits of larger body mass in horned larks, (2) the benefits of greater nest cover to buffer dark-eyed junco against precipitation events, and (3) delayed clutch initiation for savannah sparrows to limit exposure to cold storms. We provide evidence for stage-specific impacts of inclement weather on offspring development with implications for reproductive success. These results advance our understanding of early-life resilience to stochastic environments, as we may be able to predict differences in the vulnerability of alpine species to increasingly variable and severe weather conditions.

Biomolecular analyses reveal the age, sex and species identity of a near-intact Pleistocene bird carcass

Ancient remains found in permafrost represent a rare opportunity to study past ecosystems. Here, we present an exceptionally well-preserved ancient bird carcass found in the Siberian permafrost, along with a radiocarbon date and a reconstruction of its complete mitochondrial genome. The carcass was radiocarbon dated to approximately 44–49 ka BP, and was genetically identified as a female horned lark. This is a species that usually inhabits open habitat, such as the steppe environment that existed in Siberia at the time. This near-intact carcass highlights the potential of permafrost remains for evolutionary studies that combine both morphology and ancient nucleic acids.

De Novo Assembly of a High-Quality Reference Genome for the Horned Lark (Eremophila alpestris)

The Horned Lark (Eremophila alpestris) is a small songbird that exhibits remarkable geographic variation in appearance and habitat across an expansive distribution. While E. alpestris has been the focus of many ecological and evolutionary studies, we still lack a highly contiguous genome assembly for the Horned Lark and related taxa (Alaudidae). Here, we present CLO_EAlp_1.0, a highly contiguous assembly for E. alpestris generated from a blood sample of a wild, male bird captured in the Altiplano Cundiboyacense of Colombia. By combining short-insert and mate-pair libraries with the ALLPATHS-LG genome assembly pipeline, we generated a 1.04 Gb assembly comprised of 2713 scaffolds, with a largest scaffold size of 31.81 Mb, a scaffold N50 of 9.42 Mb, and a scaffold L50 of 30. These scaffolds were assembled from 23685 contigs, with a largest contig size of 1.69 Mb, a contig N50 of 193.81 kb, and a contig L50 of 1429. Our assembly pipeline also produced a single mitochondrial DNA contig of 14.00 kb. After polishing the genome, we identified 94.5% of single-copy gene orthologs from an Aves data set and 97.7% of single-copy gene orthologs from a vertebrata data set, which further demonstrates the high quality of our assembly. We anticipate that this genomic resource will be useful to the broader ornithological community and those interested in studying the evolutionary history and ecological interactions of larks, which comprise a widespread, yet understudied lineage of songbirds.

Genome Report: De novo assembly of a high-quality reference genome for the Horned Lark (Eremophila alpestris)

The Horned Lark (Eremophila alpestris) is a species of small songbird that exhibits remarkable geographic variation in appearance and habitat across an expansive distribution. While E. alpestris and related species have been the focus of many ecological and evolutionary studies, we still lack a highly contiguous genome assembly for horned larks and related taxa (Alaudidae). Here, we present CLO_EAlp_1.0, a highly contiguous assembly for horned larks generated from blood samples of a wild, male bird captured in the Altiplano Cundiboyacense of Colombia. By combining short-insert and mate-pair libraries with the ALLPATHS-LG genome assembly pipeline, we generated a 1.04 Gb assembly comprised of 2708 contigs with an N50 of 10.58 Mb and a L50 of 29. After polishing the genome, we were able to identify 94.5% of single-copy gene orthologs from an Aves data set and 97.7% of single-copy gene orthologs from a vertebrata data set, indicating that our de novo assembly is near complete. We anticipate that this genomic resource will be useful to the broader ornithological community and those interested in studying the evolutionary history and ecological interactions of a widespread, yet understudied lineage of songbirds.