multilocus approach
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Ibis ◽  
2021 ◽  
Author(s):  
Bita Shams ◽  
Jean‐Marc Pons ◽  
Jawad Abdelkrim ◽  
Jérôme Fuchs

2021 ◽  
Vol 95 ◽  
Author(s):  
B. Sayyaf Dezfuli ◽  
E. Simoni ◽  
G. Bosi ◽  
M. Palomba ◽  
S. Mattiucci ◽  
...  

Abstract A survey on Anisakis simplex (sensu stricto (s.s.)) from blue whiting, Micromesistius poutassou, in the north-eastern Atlantic Ocean revealed the occurrence of high infection levels of third larval stages in visceral organs and flesh. Larvae were genetically identified with a multilocus approach as A. simplex (s.s.). Histochemical, immunohistochemical and ultrastructural observations were conducted on 30 M. poutassou specimens. Gonads, pyloric caeca and flesh harboured encapsulated larvae of A. simplex (s.s.) but no intense host reaction was encountered around the parasite in the above organs. In the liver, the most infected organ, the larvae co-occurred with the coccidian Goussia sp. Within the granuloma around the A. simplex (s.s.) larvae, two concentric layers were recognized, an inner mostly comprising electron-dense epithelioid cells and an outer layer made of less electron-dense epithelioid cells. Macrophages and macrophage aggregates (MAs) were abundant out of the granulomas, scattered in parenchyma, and inside the MAs, the presence of engulfed Goussia sp. was frequent. In liver tissue co-infected with Goussia sp. and A. simplex (s.s.), hepatocytes showed cytoplasmic rarefaction and acute cell swelling. Results suggest that the host-induced encapsulation of A. simplex (s.s.) larvae is a strategic compromise to minimize collateral tissue damage around the larval infection sites, to facilitate the survival of both parasite and host.


2020 ◽  
Vol 6 (1) ◽  
pp. 95-127 ◽  
Author(s):  
U. Braun ◽  
C. Nakashima ◽  
M. Bakhshi ◽  
R. Zare ◽  
H.D. Shin ◽  
...  

A worldwide survey of cercosporoid ascomycete species on hosts of the genus Diospyros (persimmon) with key to the species based on characters in vivo is provided. Special emphasis is placed on species of the genus Pseudocercospora, which are in part also phylogenetically analysed, using a multilocus approach. Species of the latter genus proved to be very diverse, with a remarkable degree of cryptic speciation. Seven new species are described (Pseudocercospora diospyri-japonicae, P. diospyriphila, P. ershadii, P. kakiicola, P. kobayashiana, and P. tesselata), and two new names are introduced [P. kakiigena (≡ Cylindrosporium kaki, non Pseudocercospora kaki), and Zasmidium diospyri-hispidae (≡ Passalora diospyri, non Zasmidium diospyri)]. Six taxa are lectotypified (Cercospora atra, C. diospyri, C. diospyri var. ferruginea, C. flexuosa, C. fuliginosa, C. kaki), and Pseudocercospora kaki is epitypified.


2020 ◽  
Author(s):  
Sarah G. Delong-Duhon ◽  
Robin K. Bagley

AbstractStereum is a globally widespread genus of basidiomycete fungi with conspicuous shelf-like fruiting bodies. Several species have been extensively studied due to their economic importance, but broader Stereum taxonomy has been stymied by pervasive morphological crypsis in the genus. Here, we provide a preliminary investigation into species boundaries among some North American Stereum. The nominal species Stereum ostrea has been referenced in field guides, textbooks, and scientific papers as a common fungus with a wide geographic range and even wider morphological variability. We use ITS sequence data of specimens from midwestern and eastern North America, alongside morphological and ecological characters, to show that Stereum ostrea is a complex of at least three reproductively isolated species. Preliminary morphological analyses show that these three species correspond to three historical taxa that were previously synonymized with S. ostrea: Stereum fasciatum, Stereum lobatum, and Stereum subtomentosum. Stereum hirsutum ITS sequences taken from GenBank suggest that other Stereum species may actually be species complexes. Future work should apply a multilocus approach and global sampling strategy to better resolve the taxonomy and evolutionary history of this important fungal genus.


Plant Disease ◽  
2020 ◽  
Vol 104 (9) ◽  
pp. 2324-2329
Author(s):  
Marcela Esterio ◽  
Claudio Osorio-Navarro ◽  
Claudia Carreras ◽  
Madelaine Azócar ◽  
Charleen Copier ◽  
...  

Table grapes are highly susceptible to Botrytis cinerea infections during the bloom period. After reaching the flower development stage, B. cinerea remains quiescent until berry ripening or gives rise to blossom blight under specific climate conditions. A research study was conducted on the Chilean Central Valley during the 2018–2019 growing season. Flowers of Vitis vinifera cv. Thompson Seedless were collected and B. cinerea was isolated together to a second and morphologically different species, characterized by white mycelium and low to no sporulation (11.4% of total isolates). Three randomly selected isolates within this population were genetically examined and identified as Botrytis prunorum based on a phylogenetic multilocus approach using partial regions of genes RPB2, HSP60, and G3PDH or NEP1 and NEP2. Pathogenicity tests showed that B. prunorum infects and causes wilting in healthy table grape flowers. B. prunorum isolates were able to infect Thompson Seedless berries, inducing lesions between 13.11 and 41.53% with respect to the lesion diameter generated by B. cinerea B05.10. The fungicide sensitivity was evaluated. The three genetically characterized isolates were sensitive to boscalid and to cyprodinil/fludioxonil mixture with a mean EC50 value of 5.5 µg/ml and 0.065 µg/ml, respectively. However, loss of sensitivity to fenhexamid was determined, with a mean EC50 value of 5.13 µg/ml. Our understanding about blossom blight in V. vinifera has been limited to B. cinerea. Here we associated B. prunorum as a second causal agent of this disease in Chile. This data represents a first approach to the epidemiological characteristics of B. prunorum associated with blossom blight in table grapes.


2020 ◽  
Vol 278 ◽  
pp. 109035 ◽  
Author(s):  
Nabil Amor ◽  
Sarra Farjallah ◽  
Paolo Merella ◽  
Abdulaziz N Alagaili ◽  
Osama B. Mohammed

2019 ◽  
Vol 129 (1) ◽  
pp. 88-98
Author(s):  
Flávia M Lanna ◽  
Marcelo Gehara ◽  
Fernanda P Werneck ◽  
Emanuel M Fonseca ◽  
Guarino R Colli ◽  
...  

Abstract Species diversification can be strongly influenced by geomorphological features, such as mountains, valleys and rivers. Rivers can act as hard or soft barriers to gene flow depending on their size, speed of flow, historical dynamics and regional topographical characteristics. The São Francisco River (SFR) is the largest perennial river in the Caatinga biome in north-eastern Brazil and has been considered a barrier to gene flow and dispersal. Herein, we evaluated the role of the SFR on the evolution of Lygodactylus klugei, a small gecko from the Caatinga. Using a single-locus species delimitation method (generalized mixed Yule coalescent), we defined lineages (haploclades). Subsequently, we evaluated the role of the SFR in structuring genetic diversity in this species using a multilocus approach to quantify migration across margins. We also evaluated genetic structure based on nuclear markers, testing the number of populations found through an assignment test (STRUCTURE) across the species distribution. We recovered two mitochondrial lineages structured with respect to the SFR, but only a single population was inferred from nuclear markers. Given that we detected an influence of the SFR only on mitochondrial markers, we suggest that the current river course has acted as a relatively recent geographical barrier for L. klugei, for ~450 000 years.


2019 ◽  
Vol 26 (7) ◽  
pp. 1442-1449
Author(s):  
Karin Tamar ◽  
Laurent Chirio ◽  
Mohammed Shobrak ◽  
Salem Busais ◽  
Salvador Carranza

2019 ◽  
Vol 191 (2) ◽  
pp. 188-215
Author(s):  
Sara Mataroli De Godoy ◽  
João Fernando Marques Da Silva ◽  
Paulo Maurício Ruas ◽  
Mara Rejane Ritter ◽  
Gabriela Barbosa Navarro De Paula ◽  
...  

Abstract Mikania micrantha is native to Central and South America and exhibits morphological and cytological polymorphism, and evidence of a non-monophyletic origin. In Brazil, the species is widely distributed in the Atlantic Forest, one of the most threatened biomes in the world. AFLP, ITS, ETS and rps16 markers were employed to estimate the genetic diversity and the existence of independent evolutionary lineages in the species, and chromosomes were counted to determine ploidy of 11 populations of M. micrantha. Molecular markers showed relatively high genetic diversity and absence of genetic structure, and chromosome counts revealed pure diploid and tetraploid populations and mixed-cytotype populations in M. micrantha. There was no significant genetic difference between cytotypes, suggesting an autopolyploid origin for tetraploids. However, analyses of species delimitation showed that two highly divergent genetic clusters, constituted of samples from different populations, consisted of two independent evolutionary lineages, demonstrating putative cryptic species in M. micrantha. Our data highlight the need for more genetic studies in M. micrantha to ensure effective conservation actions in its natural area of occurrence and the correct management of the species in introduced areas, where it causes severe damage to forests and plantations.


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