AbstractThe flagellar T3SS delivers proteins from the bacterial cytosol to nascent cell surface flagella. Early subunits of the flagellar rod and hook are unchaperoned and contain their own export signals. One export signal, the gate recognition motif (GRM) docks subunits at the export gate, which must then open for unfolded subunits to enter the flagellar channel. Here, we identify a second signal at the extreme N-terminus of flagellar rod/hook subunits and determine that key to the signal is its hydrophobicity. We show that the two export signals are recognised sequentially, with the N-terminal signal being recognised only after subunits have docked at the export gate. The position of the N-terminal signal relative to the GRM is important, as a FlgD deletion variant (FlgDshort), in which the distance between the N-terminal signal and the GRM was shortened, stalled at the export machinery and was not exported. The attenuation of motility caused by FlgDshort was suppressed by mutations that destabilised the closed conformation of the FlhAB-FliPQR flagellar export gate, suggesting that the hydrophobic N-terminal signal might trigger gate opening.