Expansion of a localized population of the introduced Stratiotes aloides (Hydrocharitaceae) in Lough Derg, Ireland

An expansion of an introduced female clone of Stratiotes aloides L. (Water-soldier) was located in a delta region on the western side of Lough Derg, Co Galway (v.c.H15), Ireland in 2007. This population was followed over a thirteen-year period. It was initially located at three adjacent sheltered localities, within sweepback bays on either side of an emerging river and within an adjacent canal. The study involved surface observations later supplemented with aerial images. The shallow water conditions, shelter and the presence of Phragmites australis appear to have supported the early establishment by retaining small S. aloides clusters amongst its stems. These clusters later merged to produce a mainly surface expanding monoculture. This enlarged from less than 1 ha to approximately 3.3 ha to occupy much of the sheltered Rossmore Bay area during this study. Flowers were first noticed in 2008, and during subsequent visits, producing infertile seed-pods. Expansion took place with the production of daughter plants. A small nearby population, 1 km to the east, within an unused harbour, did not produce an emergent phase. A small group in a shallow cut, between the two locations, disappeared during the study. Aerial images from different sources were useful to identify the expansion of the emergent stage due to the distinctive bright green coloration of surface leaves. It is unclear how this plant arrived in Lough Derg, but might have been a garden plant release. Small drifting plants, seen during wintertime, may yet colonize other regions within this lake.

Defects analysis of frozen fish steak processing using six sigma: a case study

Six Sigma has been utilised to analyse defects of fish steak processing at PT X located in North Jakarta. The tools of the Six Sigma implemented in the study were Define, Measure, Analyse and Improve. The observation was conducted for two months in 2020 before the company was temporarily shut down due to Covid-19 pandemic. Four defects were detected during the study, ie under size fish, softened meat, off odor and green coloration of meat, totaling 2,446 kg out of 15,080 kg of fish. Further analysis showed that the Sigma level was 3.24 with a Defect per Million Opportunities (DPMO) of 40,739. Some improvements were recommended based on cause-effect diagram.

A Transcriptomic Approach to the Metabolism of Tetrapyrrolic Photosensitizers in a Marine Annelid

The past decade has seen growing interest in marine natural pigments for biotechnological applications. One of the most abundant classes of biological pigments is the tetrapyrroles, which are prized targets due their photodynamic properties; porphyrins are the best known examples of this group. Many animal porphyrinoids and other tetrapyrroles are produced through heme metabolic pathways, the best known of which are the bile pigments biliverdin and bilirubin. Eulalia is a marine Polychaeta characterized by its bright green coloration resulting from a remarkably wide range of greenish and yellowish tetrapyrroles, some of which have promising photodynamic properties. The present study combined metabolomics based on HPLC-DAD with RNA-seq transcriptomics to investigate the molecular pathways of porphyrinoid metabolism by comparing the worm’s proboscis and epidermis, which display distinct pigmentation patterns. The results showed that pigments are endogenous and seemingly heme-derived. The worm possesses homologs in both organs for genes encoding enzymes involved in heme metabolism such as ALAD, FECH, UROS, and PPOX. However, the findings also indicate that variants of the canonical enzymes of the heme biosynthesis pathway can be species- and organ-specific. These differences between molecular networks contribute to explain not only the differential pigmentation patterns between organs, but also the worm’s variety of novel endogenous tetrapyrrolic compounds.

Elucidation of the core betalain biosynthesis pathway in Amaranthus tricolor

Amaranthus tricolor L., a vegetable Amaranthus species, is an economically important crop containing large amounts of betalains. Betalains are natural antioxidants and can be classified into betacyanins and betaxanthins, with red and yellow colors, respectively. A. tricolor cultivars with varying betalain contents, leading to striking red to green coloration, have been commercially produced. However, the molecular differences underlying betalain biosynthesis in various cultivars of A. tricolor remain largely unknown. In this study, A. tricolor cultivars with different colors were chosen for comparative transcriptome analysis. The elevated expression of AmCYP76AD1 in a red-leaf cultivar of A. tricolor was proposed to play a key role in producing red betalain pigments. The functions of AmCYP76AD1, AmDODAα1, AmDODAα2, and AmcDOPA5GT were also characterized through the heterologous engineering of betalain pigments in Nicotiana benthamiana. Moreover, high and low L-DOPA 4,5-dioxygenase activities of AmDODAα1 and AmDODAα2, respectively, were confirmed through in vitro enzymatic assays. Thus, comparative transcriptome analysis combined with functional and enzymatic studies allowed the construction of a core betalain biosynthesis pathway of A. tricolor. These results not only provide novel insights into betalain biosynthesis and evolution in A. tricolor but also provide a basal framework for examining genes related to betalain biosynthesis among different species of Amaranthaceae.

A remarkable new species of Agoristenidae (Arachnida, Opiliones) from Córdoba, Colombia

A new species of Leiosteninae (Opiliones, Agoristenidae) from the Colombian Caribbean, Avima tuttifrutti sp. nov. García & Pastrana-M., is described and illustrated, based on two males from the montante forests of Tierralta (Córdoba department). The new species differs externally from other species of Avima by having one yellow hump on mesotergal area IV and green coloration on dorsal scutum. SEM images of the penis and a map showing its distribution are offered. This species represents the first record of a harvestman from the department of Córdoba and the eighth species of the subfamily recorded from the country.

What are the genomic consequences for plastids in a mixotrophic orchid (Epipactis helleborine)?

The chloroplast (plastid) controls carbon uptake, so its DNA sequence and function are highly conserved throughout the land plants. But for those that have alternative carbon supplies, the plastid genome is susceptible to suffer mutations in the photosynthetic genes and overall size reduction. Fully mycoheterotrophic plants receive organic carbon from their fungi partner, do not photosynthesize and also do not exhibit green coloration (or produce substantial quantities of chlorophyll). Epipactis helleborine (L.) Crantz exhibits all trophic modes from autotrophy to full mycoheterotrophy. Albinism is a stable condition in individuals of this species and does not prevent them from producing flowers and fruits. Here we assemble and compare the plastid genome of green and albino individuals. Our results show that there is still strong selective pressure in the plastid genome. Therefore, the few punctual differences among them, to our knowledge, do not affect any normal photosynthetic capability in the albino plant. These findings suggest that mutations or other genetically controlled processes in other genomes, or environmental conditions, are responsible for the phenotype.

Elucidation of the Core Betalain Biosynthesis Pathway in Amaranthus tricolor

Amaranthus tricolor L., a vegetable Amaranthus species, is an economically important crop containing large amounts of betalains. Betalains are natural antioxidants and can be classified into betacyanins and betaxanthins, with red and yellow colors, respectively. A. tricolor cultivars with varying betalain contents, leading to striking red to green coloration, have been commercially produced. However, the molecular differences underlying betalain biosynthesis in various cultivars of A. tricolor remain largely unknown. In this study, A. tricolor cultivars with different colors were chosen for comparative transcriptome analysis. The elevated expression of AmCYP76AD1 in a red-leaf cultivar of A. tricolor was proposed to play a key role in producing red betalain pigments. The functions of AmCYP76AD1, AmDODAa1, AmDODAa2, and AmcDOPA5GT were also characterized through the heterologous engineering of betalain pigments in Nicotiana benthamiana. Moreover, high and low L-DOPA 4,5-dioxygenase activities of AmDODAa1 and AmDODAa2, respectively, were confirmed through in vitro enzymatic assays. Thus, comparative transcriptome analysis combined with functional and enzymatic studies allowed the construction of a core betalain biosynthesis pathway of A. tricolor. These results not only provide novel insights into betalain biosynthesis and evolution in A. tricolor but also provide a basal framework for examining genes related to betalain biosynthesis among different species of Amaranthaceae.Accession numbers: The nucleotide sequences reported in this article have been submitted to [GenBank] under accession numbers [MT740230, MT741954, MT741955, MT741956].