Settling of highly porous and impermeable particles in linear stratification: implications for marine aggregates

The settling velocity of porous particles in linear stratification is affected by the diffusive exchange between interstitial and ambient water. The extent to which buoyancy and interstitial mass adaptation alters the settling velocity depends on the ratio of the diffusive and viscous time scales. We conducted schlieren experiments and lattice Boltzmann simulations for highly porous (95 %) but impermeable spheres settling in linear stratification. For a parameter range that resembles marine porous particles, ‘marine aggregates’, i.e. low Reynolds numbers ( $0.05\leq \textit {Re}\leq 10$ ), intermediate Froude numbers ( $0.1\leq \textit {Fr}\leq 100$ ) and Schmidt number of salt ( $\textit {Sc}=700$ ), we observe delayed mass adaptation of the interstitial fluid due to lower-density fluid being dragged by a particle that forms a density boundary layer around the particle. The boundary layer buffers the diffusive exchange of stratifying agent with the ambient fluid, leading to an enhanced density contrast of the interstitial pore fluid. Stratification-related drag enhancement by means of additional buoyancy of dragging lighter fluid and buoyancy-induced vorticity resembles earlier findings for solid spheres. However, the exchange between density boundary layer and pore fluid substantially increases stratification drag for small $\textit {Fr}$ . To estimate the effect of stratification on marine aggregates settling in the ocean, we derived scaling laws and show that small particles ( $\leq$ 0.5 mm) experience enhanced drag which increases retention times by 10 % while larger porous particle (>0.5 mm) settling is dominated by delayed mass adaptation that diminishes settling velocity by 10 % up to almost 100 %. The derived relationships facilitate the integration of stratification-dependent settling velocities into biogeochemical models.

MushPEC: Correcting Post-entrapment Processes Affecting Melt Inclusions Hosted in Olivine Antecrysts

Olivine-hosted melt inclusions (MIs) are widely used as a tool to study the early stages of magmatic evolution. There are a series of processes that affect MI compositions after trapping, including post-entrapment crystallization (PEC) of the host mineral at the MI boundaries, exsolution of volatile phases into a “shrinkage bubble” and diffusive exchange between a MI and its host. Classical correction schemes applied to olivine-hosted MIs include PEC correction through addition of olivine back to the melt until it reaches equilibrium with the host composition and “Fe-loss” correction due to Fe-Mg diffusive exchange. These corrections rely on the assumption that the original host composition is preserved. However, for many volcanic samples the crystal cargo is thought to be antecrystic, and the olivine composition may thus have been completely re-equilibrated during long crystal storage times. Here, we develop a novel MI correction scheme that is applicable when the original host crystal composition has not been preserved and the initial MI composition variability can be represented by simple fractional crystallization (FC). The new scheme allows correction of MI compositions in antecrystic hosts with long and varied temperature histories. The correction fits a set of MI compositions to modelled liquid lines of descent generated by FC. A MATLAB® script (called MushPEC) iterates FC simulations using the rhyolite-MELTS algorithm. In addition to obtaining the corrected MI compositions, the application of this methodology provides estimations of magmatic conditions during MI entrapment. A set of MIs hosted in olivine crystals of homogeneous composition (Fo77–78) from a basaltic tephra of Akita-Komagatake volcano was used to test the methodology. The tephra sample shows evidence of re-equilibration of the MIs to a narrow Mg# range equivalent to the carrier melt composition. The correction shows that olivine hosts were stored in the upper crust (c. 125 – 150 MPa) at undersaturated H2O contents of c. 1 – 2 wt% H2O).

Evaluation of Dispersed Alkaline Substrate and Diffusive Exchange System Technologies for the Passive Treatment of Copper Mining Acid Drainage

The study evaluates the performance of the novel ADES (alkaline diffusive exchange System), SDES (sulfidogenic diffusive exchange system) and DAS (Dispersed Alkaline Substrate) technologies for the passive treatment of high-strength acid mine drainage (AMD) from copper mining (pH~3, 633 mg Cu L−1). The chemical DAS and ADES prototypes showed the best performance in the removal of Cu, Al, and Zn (98–100%), while the biochemical SDES reactors achieved a high sulfate removal rate (average of 0.28 mol m−3 day-1). Notably, the DES technology was effective in protecting the sulfate-reducing communities from the high toxicity of the AMD, and also in maintaining bed permeability, an aspect that was key in the ADES reactor. The DAS reactor showed the highest reactivity, accumulating the metallic precipitates in a lower reactor volume, allowing to conclude that it requires the lowest hydraulic residence time among all the reactors. However, the concentration of precipitates resulted in the formation of a hardpan, which may trigger the need of removing it to avoid compromising the continuity of the treatment process. This study suggests the development of new treatment alternatives by combining the strengths of each technology in combined or serial treatments.

Proteomic analysis reveals the recruitment of intrinsically disordered regions to stress granules

Heat-stress triggers the formation of condensates known as stress granules (SGs), which store non-translating mRNA and stalled translation initiation complexes. To gain a better understanding of SGs, we identified yeast proteins that sediment after heat-shock by mass spectrometry. Heat-regulated proteins are biased toward a subset of abundant proteins that are significantly enriched in intrinsically disordered regions (IDRs). SG localization of over 80 heat-regulated proteins was confirmed using microscopy, including 32 proteins that were not known previously to localize to SGs. We find that several IDRs are sufficient to mediate SG recruitment. Moreover, the diffusive exchange of IDRs within SGs, observed via FRAP, can be highly dynamic while other components remain immobile. Lastly, we showed that the IDR of the Ubp3 deubiquitinase is critical for SG formation. This work confirms that IDRs play an important role in cellular compartmentalization upon stress, can be sufficient for SG incorporation, can remain dynamic in vitrified SGs, and play a vital role during heat-stress.SummaryThe authors provide an in-depth proteomic study of yeast heat stress granule (SG) proteins. They identified intrinsic disordered regions (IDRs) as one of the main features shared by these proteins and demonstrated IDRs can be sufficient for SG recruitment.

Evaluation of fine organic mixtures for treatment of acid mine drainage in sulfidogenic reactors

The performance of passive biochemical reactors in acid mine drainage (AMD) treatment could be enhanced by using fine organic substrates in new reactor designs, such as diffusive exchange reactors. This work evaluated the effect of fine cellulosic components in organic mixtures and of enrichment with inoculum, on sulfate and metals removal in discontinuous cultures for three types of synthetic AMD. The cellulosic substrates evaluated were sawdust, microcrystalline cellulose, and forestry cellulose fibers, supplemented with cow manure and leaf compost. Using microcrystalline cellulose and forestry cellulose fibers with the less concentrated AMD, high sulfate reduction rates (73 mg/L-d and 58.2 mg/L-d, respectively) were achieved. Correspondingly, iron concentrations were reduced by 69% and 86.6%. Based on their higher sulfate reducing capacity, cellulose fibers obtained as fiber boards from a local kraft pulp mill were selected for treating a synthetic AMD with a high copper concentration (273 mg/L) and pH 4.94. In batch culture, low sulfate reducing activity (13.10 mg/L-d) was only observed at the highest substrate/AMD ratio (0.5:10) tested. Results show that the use of forestry cellulose fibers in reactive mixtures supplemented with inoculum could be an alternative for optimization of diffusive exchange reactors for AMD treatment.