scholarly journals Using spatial distance sampling models to optimize survey effort and address violations of the design assumption

2021 ◽  
Vol 2 (3) ◽  
Author(s):  
Joshua H. Schmidt ◽  
William W. Deacy
2017 ◽  
Vol 55 (3) ◽  
pp. 1456-1464 ◽  
Author(s):  
Jeremy D. Mizel ◽  
Joshua H. Schmidt ◽  
Mark S. Lindberg

Author(s):  
Katherine C Kral-O’Brien ◽  
Adrienne K Antonsen ◽  
Torre J Hovick ◽  
Ryan F Limb ◽  
Jason P Harmon

Abstract Many methods are used to survey butterfly populations, with line transect and area surveys being prominent. Observers are typically limited to search within 5 or 10 m from the line, while observers are unrestricted in larger specified search regions in area surveys. Although methods differ slightly, the selection is often based on producing defendable data for conservation, maximizing data quality, and minimizing effort. To guide method selection, we compared butterfly surveys using 1) line versus area methods and 2) varying width transects (5 m, 10 m, or unrestricted) using count data from surveys in North Dakota from 2015 to 2018. Between line and area surveys, we detected more individuals with area surveys, even when accounting for effort. However, both methods accumulated new species at similar rates. When comparing transect methodology, we detected nearly 60% more individuals and nine more species when transect width increased from 5 m to unrestricted, despite similar effort across methodology. Overall, we found line surveys slightly less efficient at detecting individuals, but they collected similar species richness to area surveys when accounting for effort. Additionally, line surveys allow the use of unrestricted-width transects with distance sampling procedures, which were more effective at detecting species and individuals while providing a means to correct count data over the same transect length. Methods that reduce effort and accurately depict communities are especially important for conservation when long-term datasets are unavailable.


2021 ◽  
Vol 14 (1) ◽  
Author(s):  
Luca Villa ◽  
Pavlo Maksimov ◽  
Christine Luttermann ◽  
Mareen Tuschy ◽  
Alessia L. Gazzonis ◽  
...  

Abstract Background Neospora caninum, a coccidian protozoan, represents an important cause of bovine abortion. Available N. caninum strains show considerable variation in vitro and in vivo, including different virulence in cattle. To which extent sexual recombination, which is possible in the intestines of domestic dogs and closely related carnivores as definitive hosts, contributes to this variation is not clear yet. Methods Aborted bovine foetuses were collected between 2015 and early 2019 from Italian Holstein Friesian dairy herds suffering from reproductive problems. A total of 198 samples were collected from 165 intensive farms located in Lombardy, northern Italy. N. caninum samples were subjected to multilocus-microsatellite genotyping using ten previously established microsatellite markers. In addition to our own data, those from a recent study providing data on five markers from other northern Italian regions were included and analysed. Results Of the 55 samples finally subjected to genotyping, 35 were typed at all or 9 out of 10 loci and their individual multilocus-microsatellite genotype (MLMG) determined. Linear regression revealed a statistically significant association between the spatial distance of the sampling sites with the genetic distance of N. caninum MLMGs (P < 0.001). Including data from this and a previous North Italian study into eBURST analysis revealed that several of N. caninum MLMGs from northern Italy separate into four groups; most of the samples from Lombardy clustered in one of these groups. Principle component analysis revealed similar clusters and confirmed MLMG groups identified by eBURST. Variations observed between MLMGs were not equally distributed over all loci, but predominantly observed in MS7, MS6A, or MS10. Conclusions Our findings confirm the concept of local N. caninum subpopulations. The geographic distance of sampling was associated with the genetic distance as determined by microsatellite typing. Results suggest that multi-parental recombination in N. caninum is a rare event, but does not exclude uniparental mating. More comprehensive studies on microsatellites in N. caninum and related species like Toxoplasma gondii should be undertaken, not only to improve genotyping capabilities, but also to understand possible functions of these regions in the genomes of these parasites.


Author(s):  
Xiaorong Jiang ◽  
Wei Wei ◽  
Shenglan Wang ◽  
Tao Zhang ◽  
Chengpeng Lu

The COVID-19 epidemic has become a Public Health Emergency of International Concern. Thus, this sudden health incident has brought great risk and pressure to the city with dense population flow. A deep understanding of the migration characteristics and laws of the urban population in China will play a very positive role in the prevention and control of the epidemic situation. Based on Baidu location-based service (LBS) big data, using complex networks method and geographic visualization tools, this paper explores the spatial structure evolution of population flow network (PFN) in 368 cities of China under different traffic control situations. Effective distance models and linear regression models were established to analyze how the population flow across cities affects the spread of the epidemic. Our findings show that: (1) the scope of population flow is closely related to the administrative level of the city and the traffic control policies in various cities which adjust with the epidemic situation; The PFN mainly presents the hierarchical structure dominated by the urban hierarchy and the regional isolation structure adjacent to the geographical location.(2) through the analysis network topology structure of PFN, it is found that only the first stage has a large clustering coefficient and a relatively short average path length, which conforms to the characteristics of small world network. The epidemic situation has a great impact on the network topology in other stages, and the network structure tends to be centralized. (3) The overall migration scale of the whole country decreased by 36.85% compared with the same period of last year’s lunar calendar, and a further reduction of 78.52% in the nationwide traffic control stage after the festival. (4) Finally, based on the comparison of the effective distance and the spatial distance from the Wuhan to other destination cities, it is demonstrated that there is a higher correlation between the effective distance and the epidemic spread both in Hubei province and the whole country.


2021 ◽  
Vol 67 (4) ◽  
Author(s):  
Gianpasquale Chiatante ◽  
Marta Giordano ◽  
Anna Vidus Rosin ◽  
Oreste Sacchi ◽  
Alberto Meriggi

AbstractMore than half of the European population of the Barbary Partridge is in Sardinia; nonetheless, the researches concerning this species are very scarce, and its conservation status is not defined because of a deficiency of data. This research aimed to analyse the habitat selection and the factors affecting the abundance and the density of the Barbary Partridge in Sardinia. We used the data collected over 8 years (between 2004 and 2013) by spring call counts in 67 study sites spread on the whole island. We used GLMM to define the relationships between the environment (topography, land use, climate) both the occurrence and the abundance of the species. Moreover, we estimated population densities by distance sampling. The Barbary Partridge occurred in areas at low altitude with garrigue and pastures, avoiding woodlands and sparsely vegetated areas. We found a strong relationship between the occurrence probability and the climate, in particular, a positive relation with temperature and a negative effect of precipitation, especially in April–May, during brood rearing. Furthermore, dry crops positively affected the abundance of the species. We estimated a density of 14.1 partridges per km2, similar to other known estimates. Our findings are important both because they increase the knowledge concerning this species, which is considered data deficient in Italy, and because they are useful to plan management actions aimed to maintain viable populations if necessary.


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