Fuzzy Approaches for the Analysis CpG Island Methylation Patterns

Author(s):  
Ozy Sjahputera ◽  
Mihail Popescu ◽  
James M. Keller ◽  
Charles W. Caldwell
2005 ◽  
Vol 15 (2) ◽  
pp. 405.1-405
Author(s):  
R. R. Broaddus ◽  
S.-S. Xie ◽  
L. Ramondetta ◽  
J.-P. Issa ◽  
D. Loose

2013 ◽  
Vol 33 (16) ◽  
pp. 3150-3165 ◽  
Author(s):  
Anne-Valerie Gendrel ◽  
Y. Amy Tang ◽  
Masako Suzuki ◽  
Jonathan Godwin ◽  
Tatyana B. Nesterova ◽  
...  

TheSmchd1gene encodes a large protein with homology to the SMC family of proteins involved in chromosome condensation and cohesion. Previous studies have found that Smchd1 has an important role in CpG island (CGI) methylation on the inactive X chromosome (Xi) and in stable silencing of some Xi genes. In this study, using genome-wide expression analysis, we showed that Smchd1 is required for the silencing of around 10% of the genes on Xi, apparently independent of CGI hypomethylation, and, moreover, that these genes nonrandomly occur in clusters. Additionally, we found that Smchd1 is required for CpG island methylation and silencing at a cluster of four imprinted genes in the Prader-Willi syndrome (PWS) locus on chromosome 7 and genes from the protocadherin-alpha and -beta clusters. All of the affected autosomal loci display developmentally regulated brain-specific methylation patterns which are lost inSmchd1homozygous mutants. We discuss the implications of these findings for understanding the function of Smchd1 in epigenetic regulation of gene expression.


2009 ◽  
Vol 50 (3) ◽  
pp. 419-426 ◽  
Author(s):  
Barbara Seeliger ◽  
Stefan Wilop ◽  
Rainhardt Osieka ◽  
Oliver Galm ◽  
Edgar Jost

2005 ◽  
Vol 15 (2) ◽  
pp. 405-405
Author(s):  
R.R. Broaddus ◽  
S.-S. Xie ◽  
L. Ramondetta ◽  
J.-P. Issa ◽  
D. Loose

2018 ◽  
Vol 64 (3) ◽  
pp. 478-484 ◽  
Author(s):  
Maria Sokratous ◽  
Efthimios Dardiotis ◽  
Eleni Bellou ◽  
Zisis Tsouris ◽  
Amalia Michalopoulou ◽  
...  

2021 ◽  
Vol 19 ◽  
Author(s):  
Tingting Pi ◽  
Guangping Lang ◽  
Bo Liu ◽  
Jingshan Shi

Background: High methionine-diet (HMD) causes Alzheimer's disease (AD)-like symptoms. Previous studies have shown that Dendrobium nobile Lindle. alkaloids (DNLA) had potential benefits for AD. Object: Whether DNLA can improve AD-like symptoms induced by HMD is to be explored. Method: Mice were fed with 2% HMD diet for 11 weeks, the DNLA20 control group (20 mg/kg), DNLA10 group (10 mg/kg), and DNLA20 group (20 mg/kg) were administrated with DNLA for 3 months. Morris water maze test was used to detect learning and memory ability. Neuron damage was evaluated by HE and Nissl stainings. Levels of homocysteine (Hcy), beta-amyloid 1-42 (Aβ1-42), S-adenosine methionine (SAM), and S-adenosine homocysteine (SAH) were detected by ELISA. Immunofluorescence and western blotting (WB) were used to determine the expression of proteins. CPG island methylation. Results: Morris water maze test revealed that DNLA improved learning and memory dysfunction. HE, Nissl, and immunofluorescence stainings showed that DNLA alleviated neuron damage and reduced the 5-methylcytosine (5-mC), Aβ1-40, and Aβ1-42 levels. DNLA also decreased the levels of Hcy and Aβ1-42 in the serum, along with decreased SAM/SAH levels in the liver tissue. WB results showed that DNLA down-regulated the expression of the amyloid-precursor protein (APP), presenilin-1 (PS1), beta-secretase-1 (BACE1), DNA methyltransferase1 (DNMT1), Aβ1-40, and Aβ1-42 proteins. DNLA also up-regulated the expression of the protein of insulin-degrading enzyme (IDE), neprilysin (NEP), DNMT3a, and DNMT3b. Meanwhile, DNLA increased CPG island methylation levels of APP and BACE1 genes. Conclusions: DNLA alleviated AD-like symptoms induced by HMD via the DNA methylation pathway.


Sign in / Sign up

Export Citation Format

Share Document