scholarly journals On the normalization and visualization of author co-citation data: Salton's Cosineversus the Jaccard index

Author(s):  
Loet Leydesdorff
Keyword(s):  
Diagnostics ◽  
2021 ◽  
Vol 11 (6) ◽  
pp. 1104
Author(s):  
Siti Raihanah Abdani ◽  
Mohd Asyraf Zulkifley ◽  
Nuraisyah Hani Zulkifley

Pterygium is an eye condition that is prevalent among workers that are frequently exposed to sunlight radiation. However, most of them are not aware of this condition, which motivates many volunteers to set up health awareness booths to give them free health screening. As a result, a screening tool that can be operated on various platforms is needed to support the automated pterygium assessment. One of the crucial functions of this assessment is to extract the infected regions, which directly correlates with the severity levels. Hence, Group-PPM-Net is proposed by integrating a spatial pyramid pooling module (PPM) and group convolution to the deep learning segmentation network. The system uses a standard mobile phone camera input, which is then fed to a modified encoder-decoder convolutional neural network, inspired by a Fully Convolutional Dense Network that consists of a total of 11 dense blocks. A PPM is integrated into the network because of its multi-scale capability, which is useful for multi-scale tissue extraction. The shape of the tissues remains relatively constant, but the size will differ according to the severity levels. Moreover, group and shuffle convolution modules are also integrated at the decoder side of Group-PPM-Net by placing them at the starting layer of each dense block. The addition of these modules allows better correlation among the filters in each group, while the shuffle process increases channel variation that the filters can learn from. The results show that the proposed method obtains mean accuracy, mean intersection over union, Hausdorff distance, and Jaccard index performances of 0.9330, 0.8640, 11.5474, and 0.7966, respectively.


Crustaceana ◽  
2014 ◽  
Vol 87 (11-12) ◽  
pp. 1377-1385
Author(s):  
Patricio De los Ríos-Escalante ◽  
Andrés Muñoz-Pedreros ◽  
Patricia Möller

The inland water bodies of northern Chilean Patagonia (38-41°S) have many lakes, wetlands and ponds with different littoral and zooplanktonic crustacean assemblages. This study presents field observations of species associations sampled from shallow wetlands located in the urban zones of Valdivia (39°S) and Puerto Montt (41°S). A species presence-absence matrix was created for calculating the Jaccard Index of community similarity and for testing null models of species associations, with the aim of determining whether species associations are random or not. The results of the Jaccard Index calculations indicated the existence of non-defined groups. The results of the null model analysis denoted the presence of regulating factors for Valdivia wetlands, whereas for Puerto Montt wetlands no such factors could be demonstrated. The outcomes of both the Jaccard Index and the significant null model analysis agree with previous ecological descriptions of changes in trophic status as a consequence of changes in the surrounding basin as a determinant of species associations. The ecology of these communities is also discussed.


2015 ◽  
Vol 32 (9) ◽  
pp. 1366-1372 ◽  
Author(s):  
Dmitry Prokopenko ◽  
Julian Hecker ◽  
Edwin K. Silverman ◽  
Marcello Pagano ◽  
Markus M. Nöthen ◽  
...  

Proceedings ◽  
2018 ◽  
Vol 2 (18) ◽  
pp. 1169
Author(s):  
Macarena Díaz ◽  
Jorge Novo ◽  
Manuel G. Penedo ◽  
Marcos Ortega

We propose an automatic methodology that identifies the vascularity zones in OCT-A images and their measurement for its use in clinical analysis and diagnostic processes. The segmentation and measurement contributes objectivity and repeatability in the results, desirable characteristics in any diagnosis and monitoring process. In the validation of the method, the correlation coefficient of Pearson and Jaccard index were used, obtaining satisfactory results.


2017 ◽  
Vol 05 (06) ◽  
pp. E477-E483 ◽  
Author(s):  
Anastasios Koulaouzidis ◽  
Dimitris Iakovidis ◽  
Diana Yung ◽  
Emanuele Rondonotti ◽  
Uri Kopylov ◽  
...  

Abstract Background and aims Capsule endoscopy (CE) has revolutionized small-bowel (SB) investigation. Computational methods can enhance diagnostic yield (DY); however, incorporating machine learning algorithms (MLAs) into CE reading is difficult as large amounts of image annotations are required for training. Current databases lack graphic annotations of pathologies and cannot be used. A novel database, KID, aims to provide a reference for research and development of medical decision support systems (MDSS) for CE. Methods Open-source software was used for the KID database. Clinicians contribute anonymized, annotated CE images and videos. Graphic annotations are supported by an open-access annotation tool (Ratsnake). We detail an experiment based on the KID database, examining differences in SB lesion measurement between human readers and a MLA. The Jaccard Index (JI) was used to evaluate similarity between annotations by the MLA and human readers. Results The MLA performed best in measuring lymphangiectasias with a JI of 81 ± 6 %. The other lesion types were: angioectasias (JI 64 ± 11 %), aphthae (JI 64 ± 8 %), chylous cysts (JI 70 ± 14 %), polypoid lesions (JI 75 ± 21 %), and ulcers (JI 56 ± 9 %). Conclusion MLA can perform as well as human readers in the measurement of SB angioectasias in white light (WL). Automated lesion measurement is therefore feasible. KID is currently the only open-source CE database developed specifically to aid development of MDSS. Our experiment demonstrates this potential.


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