scholarly journals Cover Feature: 4‐Aminophthalimide Amino Acids as Small and Environment‐Sensitive Fluorescent Probes for Transmembrane Peptides (ChemBioChem 5/2020)

ChemBioChem ◽  
2020 ◽  
Vol 21 (5) ◽  
pp. 573-573
Author(s):  
Samantha Wörner ◽  
Franziska Rönicke ◽  
Anne S. Ulrich ◽  
Hans‐Achim Wagenknecht
ChemBioChem ◽  
2019 ◽  
Vol 21 (5) ◽  
pp. 618-622 ◽  
Author(s):  
Samantha Wörner ◽  
Franziska Rönicke ◽  
Anne S. Ulrich ◽  
Hans‐Achim Wagenknecht

2020 ◽  
Author(s):  
Breanna L. Zerfas ◽  
Rachel A. Coleman ◽  
Andres Salazar Chaparro ◽  
Nathaniel J. Macatangay ◽  
Darci Trader

<div> <div> <div> <p>The proteasome is an essential protein complex that, when dysregulated, can result in various diseases in eukaryotic cells. As such, understanding the enzymatic activity of the proteasome and what can alter it is crucial to elucidating its roles in these diseases. This can be done effectively by using activity-based fluorescent substrate probes, of which there are many commercially available that target the individual protease-like subunits in the 20S CP of the proteasome. Unfortunately, these probes have not displayed appropriate characteristics for their use in live cell-based assays. In the work presented here, we have developed a set of probes which have shown improved fluorescence properties and selectivity towards the proteasome compared to other cellular proteases. By including unnatural amino acids, we have found probes which can be utilized in various applications, including monitoring the effects of small molecule stimulators of the proteasome in live cells and comparing the relative proteasome activity across different cancer cell types. In future studies, we expect the fluorescent probes presented here will serve as tools to support the discovery and characterization of small molecule modulators of proteasome activity. </p> </div> </div> </div>


2020 ◽  
Vol 56 (12) ◽  
pp. 1887-1890 ◽  
Author(s):  
Jonathan D. Bell ◽  
Alexander H. Harkiss ◽  
David Nobis ◽  
Eilidh Malcolm ◽  
Astrid Knuhtsen ◽  
...  

Conformationally rigid unnatural α-amino acids bearing a pyrazoloquinazoline ring system that are amenable to both one- and two-photon excitation have been developed as new fluorescent probes.


2004 ◽  
Vol 124 (6) ◽  
pp. 759-771 ◽  
Author(s):  
Steven D. Gage ◽  
William R. Kobertz

The five KCNE genes encode a family of type I transmembrane peptides that assemble with KCNQ1 and other voltage-gated K+ channels, resulting in potassium conducting complexes with varied channel-gating properties. It has been recently proposed that a triplet of amino acids within the transmembrane domain of KCNE1 and KCNE3 confers modulation specificity to the peptide, since swapping of these three residues essentially converts the recipient KCNE into the donor (Melman, Y.F., A. Domenech, S. de la Luna, and T.V. McDonald. 2001. J. Biol. Chem. 276:6439–6444). However, these results are in stark contrast with earlier KCNE1 deletion studies, which demonstrated that a COOH-terminal region, highly conserved between KCNE1 and KCNE3, was responsible for KCNE1 modulation of KCNQ1 (Tapper, A.R., and A.L. George. 2000 J. Gen. Physiol. 116:379–389.). To ascertain whether KCNE3 peptides behave similarly to KCNE1, we examined a panel of NH2- and COOH-terminal KCNE3 truncation mutants to directly determine the regions required for assembly with and modulation of KCNQ1 channels. Truncations lacking the majority of their NH2 terminus, COOH terminus, or mutants harboring both truncations gave rise to KCNQ1 channel complexes with basal activation, a hallmark of KCNE3 modulation. These results demonstrate that the KCNE3 transmembrane domain is sufficient for assembly with and modulation of KCNQ1 channels and suggests a bipartite model for KCNQ1 modulation by KCNE1 and KCNE3 subunits. In this model, the KCNE3 transmembrane domain is active in modulation and overrides the COOH terminus' contribution, whereas the KCNE1 transmembrane domain is passive and reveals COOH-terminal modulation of KCNQ1 channels. We furthermore test the validity of this model by using the active KCNE3 transmembrane domain to functionally rescue a nonconducting, yet assembly and trafficking competent, long QT mutation located in the conserved COOH-terminal region of KCNE1.


2010 ◽  
Vol 98 (3) ◽  
pp. 91a
Author(s):  
Vitaly V. Vostrikov ◽  
Anna E. Daily ◽  
Denise V. Greathouse ◽  
Roger E. Koeppe

2020 ◽  
Vol 15 (9) ◽  
pp. 2588-2596 ◽  
Author(s):  
Breanna L. Zerfas ◽  
Rachel A. Coleman ◽  
Andres F. Salazar-Chaparro ◽  
Nathaniel J. Macatangay ◽  
Darci J. Trader

2014 ◽  
Vol 205 ◽  
pp. 345-351 ◽  
Author(s):  
Chaoxia Guo ◽  
Xiaofeng Yang ◽  
Xiuxia Yang ◽  
Wenxue Zhu ◽  
Meishan Pei ◽  
...  

Synthesis ◽  
2003 ◽  
pp. 2647-2654 ◽  
Author(s):  
Robert A. Batey ◽  
Carlos A. Afonso ◽  
V. Santhakumar ◽  
Alan Lough

Author(s):  
Chen-Ming Lin ◽  
Syed Muhammad Usama ◽  
Kevin Burgess

Convenient labeling of proteins is important for observing its function under physiological conditions. &nbsp;In tissues particularly, heptamethine cyanine dyes (Cy-7) are valuable because they absorb in near infrared (NIR) region (750 &ndash; 900 nm) where light penetration is maximal.&nbsp; In this work, we found Cy-7 dyes with a meso-Cl functionality covalently binding to proteins with free Cys residues under physiological conditions (aqueous environments, at near neutral pH, and 37 &deg;C).&nbsp; It transpired that the meso-Cl of the dye was displaced by free thiols in protein, while nucleophilic side-chains from amino acids like Tyr, Lys, and Ser did not react.&nbsp; This finding shows a new possibility for convenient and selective labeling of proteins with near-IR fluorescent probes.


2020 ◽  
Author(s):  
Breanna L. Zerfas ◽  
Rachel A. Coleman ◽  
Andres Salazar Chaparro ◽  
Nathaniel J. Macatangay ◽  
Darci Trader

<div> <div> <div> <p>The proteasome is an essential protein complex that, when dysregulated, can result in various diseases in eukaryotic cells. As such, understanding the enzymatic activity of the proteasome and what can alter it is crucial to elucidating its roles in these diseases. This can be done effectively by using activity-based fluorescent substrate probes, of which there are many commercially available that target the individual protease-like subunits in the 20S CP of the proteasome. Unfortunately, these probes have not displayed appropriate characteristics for their use in live cell-based assays. In the work presented here, we have developed a set of probes which have shown improved fluorescence properties and selectivity towards the proteasome compared to other cellular proteases. By including unnatural amino acids, we have found probes which can be utilized in various applications, including monitoring the effects of small molecule stimulators of the proteasome in live cells and comparing the relative proteasome activity across different cancer cell types. In future studies, we expect the fluorescent probes presented here will serve as tools to support the discovery and characterization of small molecule modulators of proteasome activity. </p> </div> </div> </div>


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