Peptidome profiling of induced sputum by mesoporous silica beads and MALDI-TOF MS for non-invasive biomarker discovery of chronic inflammatory lung diseases

PROTEOMICS ◽  
2011 ◽  
Vol 11 (16) ◽  
pp. 3402-3414 ◽  
Author(s):  
Rosa Terracciano ◽  
Mariaimmacolata Preianò ◽  
Grazia P. Palladino ◽  
Giovanna E. Carpagnano ◽  
Maria P. Foschino Barbaro ◽  
...  
2009 ◽  
Vol 20 (5) ◽  
pp. 913-923 ◽  
Author(s):  
Rosa Terracciano ◽  
Luigi Pasqua ◽  
Francesca Casadonte ◽  
Stella Frascà ◽  
Mariaimmacolata Preianò ◽  
...  

2006 ◽  
Vol 27 (1) ◽  
pp. 11-17 ◽  
Author(s):  
Ying Li ◽  
Godelieve C. M. L. Page-Christiaens ◽  
Johan J. P. Gille ◽  
Wolfgang Holzgreve ◽  
Sinuhe Hahn

2016 ◽  
Vol 458 ◽  
pp. 84-98 ◽  
Author(s):  
Joanna Hajduk ◽  
Jan Matysiak ◽  
Zenon J. Kokot

Molecules ◽  
2019 ◽  
Vol 24 (12) ◽  
pp. 2311
Author(s):  
Rosa Terracciano ◽  
Mariaimmacolata Preianò ◽  
Giuseppina Maggisano ◽  
Corrado Pelaia ◽  
Rocco Savino

Improvement in high-throughput MALDI-TOF MS analysis requires practical and efficient sample preparation protocols for high acquisition rates. The use of hexagonal mesoporous silica (HMS) sorbents in combination with MALDI-TOF MS was explored as a versatile tool for peptidomic profiling of clinical specimens difficult to process, but considered important sources of disease biomarkers: synovial fluid and sputum. A rapid and efficient procedure, based on dispersive solid-phase extraction of peptides using commercially available wormhole mesostructured HMS, was tested for: a) pre-concentration of standard peptides in serially diluted solution up to the sub-nanomolar range; b) peptidome profiling of sputum and synovial fluid. The use of HMS, as dispersed sponges, significantly amplified the peptidic repertoire of sputum and synovial fluid by excluding from the adsorptive process large size proteins, which mask and/or suppress peptidome signals. The protocol proposed, as dispersive solid phase extraction, ensures good analytical performances. Moreover, it is economical and rapid, as it avoids the use of less reproducible and prolonged sample preparation procedures, such as the use of ultrafiltration filter devices. These findings may contribute to defining a high-throughput screening MS-based platform for monitoring key peptidic features of difficult to analyse bodily fluids in a clinical setting.


2018 ◽  
Vol 14 (28) ◽  
pp. 93-111
Author(s):  
Simón Robledo-Cardona ◽  
Sabina Ramírez-Hincapié ◽  
Javier Correa-Álvarez

In animal production, probiotics seek to replace the use of antibiotics, while diminishing mortality and morbidity rates to raise productivity. Probiotics constitute a natural alternative that, in contrast with antibiotics, neither produces pathogen resistance, nor leaves chemical residues in the final product. Several bacteria, including some belonging to the genus Lactobacillus have been described as probiotics with high potential. A non-invasive bioprospecting protocol aimed for the isolation and characterization of lactobacilli from chicken feces was established. Fecal samples were collected from the ground. These were diluted and cultured in LAB selective medium. Colonies were identified by three methods: Gram stain, MALDI-TOF MS and sequencing of 16S rRNA gene. An initial probiotic potential of lactobacilli isolates was determined via antagonism tests using five enteropathogen reference strains: Staphylococcus aureus, Enterococcus faecium, Candida albicans, Pseudomonas spp. and Salmonella spp. 24 isolates belonging to four Lactobacillus species were identified by MALDITOF MS. BLAST of 16S rRNA gene of eight randomly selected isolates, confirmed MALDI-TOF MS identification. Five of these eight isolates inhibited the growth of at least one of the pathogenic strains used, three isolates of Lactobacillus plantarum and two of Lactobacillus salivarius. Our protocol achieved 21 lactobacilli per 100 isolates performance, greatly surpassing the normal percentage of lactobacilli in chicken gut microbiome, that so, its implementation would facilitate the isolation and identification of new probiotic strains from feces.


2009 ◽  
pp. 421-456
Author(s):  
R. M. Vallant ◽  
M. Rainer ◽  
M. Najam-Ul-Haq ◽  
R. Bakry ◽  
C. Petter ◽  
...  

2019 ◽  
Vol 55 (67) ◽  
pp. 9927-9930 ◽  
Author(s):  
Guiyuan Zhang ◽  
Liyan Jiang ◽  
Juntao Zhou ◽  
Lianghai Hu ◽  
Shouhua Feng

Molecularly imprinted mesoporous silica nanoparticles were synthesized to specifically enrich tyrosine phosphorylated peptides followed by MALDI-TOF MS detection.


Metabolites ◽  
2021 ◽  
Vol 11 (6) ◽  
pp. 333
Author(s):  
Sujatha Kandasamy ◽  
Jayeon Yoo ◽  
Jeonghee Yun ◽  
Han-Byul Kang ◽  
Kuk-Hwan Seol ◽  
...  

Geographical origin and authenticity are the two crucial factors that propel overall cheese perception in terms of quality and price; therefore, they are of great importance to consumers and commercial cheese producers. Herein, we demonstrate a rapid, accurate method for discrimination of domestic and import mozzarella cheeses in the Republic of Korea by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS). The protein profiles’ data aided by multivariate statistical analysis successfully differentiated farmstead and import mozzarella cheeses according to their geographical location of origin. A similar investigation within domestic samples (farmsteads/companies) also showed clear discrimination regarding the producer. Using the biomarker discovery tool, we identified seven distinct proteins, of which two (m/z 7407.8 and 11,416.6) were specific in farmstead cheeses, acting as potential markers to ensure authentication and traceability. The outcome of this study can be a good resource in building a database for Korean domestic cheeses. This study also emphasizes the combined utility of MALDI-TOF MS and multivariate analysis in preventing fraudulent practices, thereby ensuring market protection for Korean farmstead cheeses.


Talanta ◽  
2010 ◽  
Vol 80 (4) ◽  
pp. 1532-1538 ◽  
Author(s):  
Rosa Terracciano ◽  
Francesca Casadonte ◽  
Luigi Pasqua ◽  
Patrizio Candeloro ◽  
Enzo Di Fabrizio ◽  
...  

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