ABSTRACTRNA maturation is a highly regulated process whose precision is indispensable for the correct transfer of genetic information and, thus, the survival of any living organism. While in higher eukaryotes, this process is known to be assisted by the spliceosome, a very complex system assembled from numerous proteins, in bacteria splicing is catalyzed by ribozymes only. In lower eukaryotes however, e.g., yeast, RNA maturation is also expected to be less complex or simplified. Here, we focus on the mitochondrial group IIB intron RNA Sc.ai5γ from Saccharomyces cerevisiae (Sc.) and Mss116, a protein of the DEAD-box helicase family, known to play a crucial role in the Sc.ai5γ maturation pathway, acting as a co-factor in vivo. Although to date, only Mss116 has been described to be involved in the maturation of Sc.ai5γ, we hypothesize that the folding and splicing of Sc.ai5γ is regulated by more than one protein co-factor, i.e., that a complex or series of several proteins participate in folding and splicing the immature RNA correctly. For the identification of new potential Sc.ai5γ binders we coupled SPR imaging with matrix-assisted laser desorption/ionization mass spectrometry. This combination results in a powerful method to screen for specific RNA-binding proteins from complex mixtures, specifically lysate of the coarse mitochondrial fraction from yeast. Our results indicate that several proteins other than the well-known co-factor Mss116 interact with Sc.ai5γ, namely Dbp8, Prp8, Mrp13, and Cullin-3. With this novel approach, we report the identification of RNA-binding proteins from a crude yeast mitochondrial lysate in a non-targeted approach.