2020 ◽  
Vol 48 (11) ◽  
pp. 6198-6209 ◽  
Author(s):  
Xiaolong Dong ◽  
Guosheng Qu ◽  
Carol Lyn Piazza ◽  
Marlene Belfort

Abstract Group II introns are self-splicing ribozymes and mobile genetic elements. Splicing is required for both expression of the interrupted host gene and intron retromobility. For the pRS01 plasmid-encoded Lactococcus lactis group II intron, Ll.LtrB, splicing enables expression of the intron's host relaxase protein. Relaxase, in turn, initiates horizontal transfer of the conjugative pRS01 plasmid and stimulates retrotransposition of the intron. Little is known about how splicing of bacterial group II introns is influenced by environmental conditions. Here, we show that low temperatures can inhibit Ll.LtrB intron splicing. Whereas autocatalysis is abolished in the cold, splicing is partially restored by the intron-encoded protein (IEP). Structure profiling reveals cold-induced disruptions of key tertiary interactions, suggesting that a kinetic trap prevents the intron RNA from assuming its native state. Interestingly, while reduced levels of transcription and splicing lead to a paucity of excised intron in the cold, levels of relaxase mRNA are maintained, partially due to diminished intron-mediated mRNA targeting, allowing intron spread by conjugal transfer. Taken together, this study demonstrates not only the intrinsic cold sensitivity of group II intron splicing and the role of the IEP for cold-stress adaptation, but also maintenance of horizontal plasmid and intron transfer under cold-shock.


2014 ◽  
Vol 127 (20) ◽  
pp. 4443-4456 ◽  
Author(s):  
Adva Aizer ◽  
Alon Kalo ◽  
Pinhas Kafri ◽  
Amit Shraga ◽  
Rakefet Ben-Yishay ◽  
...  

RNA Biology ◽  
2010 ◽  
Vol 7 (3) ◽  
pp. 373-380 ◽  
Author(s):  
Wang-Xia Wang ◽  
Bernard R. Wilfred ◽  
Kevin Xie ◽  
Mary H. Jennings ◽  
Yanling Hu ◽  
...  
Keyword(s):  

PLoS Biology ◽  
2012 ◽  
Vol 10 (12) ◽  
pp. e1001439 ◽  
Author(s):  
Daniel Feltrin ◽  
Ludovico Fusco ◽  
Harald Witte ◽  
Francesca Moretti ◽  
Katrin Martin ◽  
...  

2021 ◽  
Author(s):  
Feng He ◽  
Chan Wu ◽  
Allan Jacobson

A single Dcp1-Dcp2 decapping enzyme targets diverse classes of yeast mRNAs for decapping-dependent 5′ to 3′ decay, but the molecular mechanisms controlling selective mRNA targeting by the enzyme remain elusive. Through extensive genetic analyses we uncover cis-regulatory elements in the Dcp2 C-terminal domain that control selective targeting of the decapping enzyme by forming distinct decapping complexes. Two Upf1-binding motifs target the decapping enzyme to NMD substrates, and a single Edc3-binding motif targets both Edc3 and Dhh1 substrates. Pat1-binding leucine-rich motifs target Edc3 and Dhh1 substrates under selective conditions. Although it functions as a unique targeting component of specific complexes, Edc3 is a common component of multiple complexes. Xrn1 also has a specific Dcp2 binding site, allowing it to be directly recruited to decapping complexes. Collectively, our results demonstrate that Upf1, Edc3, and Pat1 function as regulatory subunits of the holo-decapping enzyme, controlling both its targeting specificity and enzymatic activation.


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