Molecular testing in Cutaneous Melanoma

2014 ◽  
pp. 363-374
Author(s):  
Margaret Redpath ◽  
Leon van Kempen ◽  
Caroline Robert ◽  
Alan Spatz
2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Ivana Ticha ◽  
Jan Hojny ◽  
Romana Michalkova ◽  
Ondrej Kodet ◽  
Eva Krkavcova ◽  
...  

AbstractThe most common histological subtypes of cutaneous melanoma include superficial spreading and nodular melanoma. However, the spectrum of somatic mutations developed in those lesions and all potential druggable targets have not yet been fully elucidated. We present the results of a sequence capture NGS analysis of 114 primary nodular and superficial spreading melanomas identifying driver mutations using biostatistical, immunohistochemical and/or functional approach. The spectrum and frequency of pathogenic or likely pathogenic variants were identified across 54 evaluated genes, including 59 novel mutations, and the newly identified TP53 loss-of-function mutations p.(L194P) and p.(R280K). Frequently mutated genes most commonly affected the MAPK pathway, followed by chromatin remodeling, and cell cycle regulation. Frequent aberrations were also detected in the genes coding for proteins involved in DNA repair and the regulation and modification of cellular tight junctions. Furthermore, relatively frequent mutations were described in KDR and MET, which represent potential clinically important targets. Those results suggest that with the development of new therapeutic possibilities, not only BRAF testing, but complex molecular testing of cutaneous melanoma may become an integral part of the decision process concerning the treatment of patients with melanoma.


2021 ◽  
Vol 19 (5.5) ◽  
pp. 644-647
Author(s):  
Douglas B. Johnson ◽  
Susan M. Swetter ◽  
April K.S. Salama ◽  
Evan Wuthrick

Several advances in diagnosis and treatment of cutaneous melanoma were discussed at the NCCN 2021 Virtual Annual Conference. First, advances in immunotherapies and targeted agents have enhanced the role of systemic therapies in the up-front management of brain metastases in melanoma while improving survival. With dual-agent immune checkpoint inhibitors, more than half of patients with asymptomatic brain metastases that are not in high-risk anatomic areas of the brain respond to treatment, and these responses appear to be durable, sparing many patients from neurosurgery and/or stereotactic radiosurgery. In addition, molecular tests increasingly have implications for clinical decision-making in later-stage disease. The most important genetic mutation in melanoma is the BRAF V600 mutation, which can be found in approximately 40% to 50% of cutaneous melanomas.


Cancers ◽  
2021 ◽  
Vol 13 (11) ◽  
pp. 2725
Author(s):  
Sandra N. Freiberger ◽  
Patrick Turko ◽  
Martin Hüllner ◽  
Reinhard Dummer ◽  
Grégoire B. Morand ◽  
...  

Mucosal melanoma can be driven by various driver mutations in genes such as NRAS, KIT, or KRAS. However, some cases present with only weak drivers, or lacking known oncogenic drivers, suggesting immunotherapy over targeted therapy. While resistance mechanisms to immunotherapy in cutaneous melanoma have been uncovered, including alterations in JAK1/2, B2M, or STK11, a switch of oncogenic drivers under immunotherapy has not yet been observed. We report three cases of metastatic sinonasal melanoma that switched oncogenic drivers from KRAS, KIT, or no driver to NRAS during or after immunotherapy, thereby showing progressive disease. One of the cases presented with three spatially separate driver mutations in the primary tumor, whereas the NRAS clone persisted under immunotherapy. In comparison, three different control cases receiving radiotherapy only did not show a change of the detectable molecular drivers in their respective recurrences or metastases. In summary, these data provide an important rationale for longitudinal molecular testing, based on evidence for an unforeseen recurrent event of molecular driver switch to NRAS in progressing sinonasal melanoma. These findings provide the basis for further studies on a potential causal relation of emerging NRAS mutant clones and immunotherapy.


2020 ◽  
Vol 38 (15_suppl) ◽  
pp. e22031-e22031
Author(s):  
Anthony J. Olszanski ◽  
Jeffrey M. Farma

e22031 Background: National guidelines (eg, NCCN and ESMO) recommend BRAF mutation testing to inform treatment (tx) decisions in high-risk stage III or IV cutaneous melanoma, but few studies have evaluated its implementation in a real-world setting. Here we report the testing patterns for BRAF and other mutations in advMel via an electronic health record (EHR)–derived database, to assess guideline adherence and implications for patient (pt) care. Methods: This retrospective observational study used Flatiron Health’s nationwide longitudinal database comprising de-identified EHR structured and unstructured data, curated via technology-enabled abstraction. Pts with stage III or IV cutaneous melanoma at initial diagnosis, or a locoregional or distant recurrence, with ≥ 2 clinic encounters starting January 1, 2011 were included in the advMel cohort. Data through October 2019 were analyzed. Results: A total of 9333 pts from 160 US cancer clinics were in the advMel cohort. Overall, 21% of pts had no evidence of BRAF testing. In the adjuvant setting, the percentage of pts with known BRAF status before initiation of systemic tx increased from 34% prior to the year 2018 to 56% post approval of adjuvant targeted tx in 2018. The rate of known BRAF status before initiation of first line (1L) metastatic tx declined from 80% in 2012 to 62% in 2018. Notably, within 30 days after tx initiation, BRAF status was reported in an additional 17% of pts in 1L metastatic setting. Next-generation sequencing (NGS) overtook polymerase chain reaction (PCR) as the most common assay (40% NGS vs 22% PCR in 2018, whilst 8% vs 53% in 2012). Of the 35-day (NGS) or 27-day (PCR) median turnaround time from sample collection to results, 21-25 days occurred from specimen collection to receipt in the lab. Despite this turnaround time, 35% of pts with known BRAF status before tx initiation had NGS testing. Of all pts tested for BRAF, 30% were also tested for NRAS and 32% for KIT. Among pts with a BRAF mutation, concomitant NRAS (1.1%) or KIT (0.6%) mutation was rare. Conclusions: Our real-world analysis shows that BRAF mutation status is known in ≈60% of pts with advMel before initiation of adjuvant or 1L metastatic tx. NGS and PCR are the most common testing platforms, with the use of NGS on the rise. Notably, a prolonged time was observed between collection and lab receipt of the specimen. These results indicate an opportunity for physicians to conduct earlier molecular testing at workup per the guidelines, and for improved logistical efficiency to facilitate timely receipt of genomic results to better inform individualized tx plans.


Cancers ◽  
2019 ◽  
Vol 11 (9) ◽  
pp. 1329
Author(s):  
Sandra N. Freiberger ◽  
Grégoire B. Morand ◽  
Patrick Turko ◽  
Ulrich Wager ◽  
Reinhard Dummer ◽  
...  

Sinonasal melanoma is a rare subtype of melanoma and little is known about its molecular fingerprint. Systemic treatment options are limited, as targetable BRAF mutations are rare compared to cutaneous melanoma. Currently, metastatic sinonasal melanoma is being treated according to the guidelines of cutaneous melanoma. In this study, we investigated the molecular profile of 19 primary sinonasal melanomas, using a novel customized melanoma-specific next generation sequencing (NGS) panel (MelArray) of 190 genes. Results were correlated to histological and clinical features to further characterize this rare, aggressive type of melanoma and screen for prognostic markers and possible treatment options. Molecular profiles encompassed predominantly mutations in NRAS (25%), whereas KIT or BRAF p.V600 mutations were not detected. Tumor mutational burden was overall low. High level of copy number variations (CNVs) were associated with alterations in DNA-repair genes and shorter distant metastasis-free survival (p = 0.005). Monomorphic (vs. pleomorphic) morphology was found to be significantly associated with worse disease-specific survival (p < 0.001), however no correlation between morphology and molecular aberrations was found. A variety of alterations in different pathways were detected, justifying molecular testing and opening potential personalized treatment options in current study or compassionate use settings.


2019 ◽  
Vol 3 (4) ◽  
pp. 239-249 ◽  
Author(s):  
Etan Marks ◽  
Hillary G. Caruso ◽  
Sarah J Kurley ◽  
Sidra Ibad ◽  
Kristen M Plasseraud ◽  
...  

Treatment plans for cutaneous melanoma are based upon individual risk of recurrence. Decisions made post-diagnosis include recommendation for a sentinel lymph node biopsy (SLNB), followed by management decisions such as surveillance, frequency of follow-up, and interdisciplinary consultations including possible adjuvant therapy use. These have traditionally been guided by clinicopathologic factors, but discordance exists, as a substantial number of melanoma deaths occur in patients diagnosed with disease considered to be early stage by such factors, including a negative SLNB.  Molecular testing can be used to apply an objective approach that optimizes individualized patient care.  The 31-gene expression profile (31-GEP) test has been validated in nearly 1600 patients as an independent predictor of risk of recurrence, distant metastasis and death in Stage I-III melanoma and can guide SLNB decisions in patient subgroups, as demonstrated in 1421 patients.  While clinical use of the 31-GEP test has been adopted into routine practice, an evidence-based analysis of a decision point for use in thin, T1 tumors would be clinically useful.  To help define an appropriate population for 31-GEP testing, we evaluated changes in patient management, cumulative differential risk across Breslow thicknesses based on a large dataset, and 31-GEP subclass distribution in a clinically tested cohort. Based on this, appropriate use of the 31-GEP test for management decisions was found to be in cutaneous melanoma tumors ≥0.3 mm thick.


2020 ◽  
Vol 22 (Supplement_2) ◽  
pp. ii142-ii143
Author(s):  
Kevin Elmore ◽  
Ugur Sener ◽  
Elsie Ennin ◽  
Stephanie Suser ◽  
Ashfaq Marghoob ◽  
...  

Abstract Neurocutaneous melanocytosis (NCM) is a rare neurocutaneous syndrome which typically develops in children with large congenital melanocytic nevi (LCMN) and excessive melanocyte proliferation in the leptomeninges and brain parenchyma. Malignant melanoma develops in an estimated 2.3% of patients with LCMN and 40-60% of patients with NCM. NCM-associated melanomas frequently harbor NRAS mutations with no well-established role for targeted therapy. In a retrospective, single-institution study, we reviewed eleven patients with NCM-associated CNS melanoma evaluated at Memorial Sloan Kettering Cancer Center from June 2000 to January 2020. Five patients had previously identified focal melanocytosis prior to developing melanoma. In this subgroup, the median time from identification of focal melanocytosis to melanoma diagnosis was 80 months (range: 18-200). Median age at melanoma diagnosis was 9.9 years (range: 1.1-25.3). Presentation at the time of diagnosis with CNS melanoma included headache (45%), focal deficits (45%), and seizure (18%). Eight patients had hydrocephalus (73%). Five patients presented with a focal mass (45%) and six patients had focal or diffuse leptomeningeal disease without a mass (55%). Leptomeningeal spread eventually developed in all patients. Where molecular testing was available, three melanomas had NRAS mutations and none were associated with BRAF mutations. Seven patients were treated with cancer-directed therapy including temozolomide, trametinib, ipilimumab, and nivolumab, with each therapy being administered to two patients. Radiation therapy was used in three patients, including whole brain radiation therapy and stereotactic radiosurgery. Median survival from melanoma diagnosis was 9.1 months (range: 1-60.4). The longest surviving patient was initially diagnosed with cutaneous melanoma, surviving 60.4 months after diagnosis with cutaneous melanoma and 22.7 months after diagnosis with CNS melanoma. Prognosis remains guarded in patients with NCM-associated melanoma, and further investigation is warranted to identify effective management strategies.


1979 ◽  
Vol 115 (7) ◽  
pp. 864-865 ◽  
Author(s):  
M. J. Mastrangelo
Keyword(s):  

Sign in / Sign up

Export Citation Format

Share Document