Promises and Pitfalls of High-Throughput Biological Assays

Author(s):  
Greg Finak ◽  
Raphael Gottardo
2018 ◽  
Vol 24 (4) ◽  
pp. 492-500
Author(s):  
Béatrice Colin ◽  
Benoit Deprez ◽  
Cyril Couturier

The Labcyte Echo acoustic liquid handler allows accurate droplet ejection at high speed from a source well plate to a destination plate. It has already been used in various miniaturized biological assays, such as quantitative PCR (q-PCR), quantitative real-time PCR (q-RT-PCR), protein crystallization, drug screening, cell dispensing, and siRNA transfection. However, no plasmid DNA transfection assay has been published so far using this dispensing technology. In this study, we evaluated the ability of the Echo 550 device to perform plasmid DNA transfection in 384-well plates. Due to the high throughput of this device, we simultaneously optimized the three main parameters of a transfection process: dilution of the transfection reagent, DNA amount, and starting DNA concentration. We defined a four-step protocol whose optimal settings allowed us to transfect HeLa cells with up to 90% efficiency and reach a co-expression of nearly 100% within transfected cells in co-transfection experiments. This fast, reliable, and automated protocol opens new ways to easily and rapidly identify optimal transfection settings for a given cell type. Furthermore, it permits easy software-based transfection control and multiplexing of plasmids distributed on wells of a source plate. This new development could lead to new array applications, such as human ORFeome protein expression or CRISPR-Cas9-based gene function validation in nonpooled screening strategies.


Author(s):  
Helena Zec ◽  
Tushar D. Rane ◽  
Wen-Chy Chu ◽  
Tza-Huei Wang

We propose a microfluidic droplet-based platform that accepts an unlimited number of sample plugs from a multi-well plate, performs splitting of these sample droplets into smaller daughter droplets and subsequent synchronization-free, reliable fusion of sample daughter droplets with multiple reagents simultaneously. This system consists of two components: 1) a custom autosampler which generates a linear array of sub-microliter plugs in a microcapillary from a multi-well plate and 2) A microfluidic chip with channels for sample plug introduction, reagent merging and droplet incubation. This novel system generates large arrays of heterogeneous droplets from hundreds to thousands of samples while concurrently screening these arrays against a large array of reagents. This high throughput system minimizes sample and reagent consumption and can be applied to a gamut of biological assays, ranging from SNP detection to forensic screening.


2021 ◽  
pp. 247255522110262
Author(s):  
Nathan P. Coussens ◽  
Douglas S. Auld ◽  
Jonathan R. Thielman ◽  
Bridget K. Wagner ◽  
Jayme L. Dahlin

Compound-dependent assay interferences represent a continued burden in drug and chemical probe discovery. The open-source National Institutes of Health/National Center for Advancing Translational Sciences (NIH/NCATS) Assay Guidance Manual (AGM) established an “Assay Artifacts and Interferences” section to address different sources of artifacts and interferences in biological assays. In addition to the frequent introduction of new chapters in this important topic area, older chapters are periodically updated by experts from academia, industry, and government to include new technologies and practices. Section chapters describe many best practices for mitigating and identifying compound-dependent assay interferences. Using two previously reported biochemical high-throughput screening campaigns for small-molecule inhibitors of the epigenetic targets Rtt109 and NSD2, the authors review best practices and direct readers to high-yield resources in the AGM and elsewhere for the mitigation and identification of compound-dependent reactivity and aggregation assay interferences.


2020 ◽  
Vol 3 (10) ◽  
pp. 6661-6671
Author(s):  
Arian Jaberi ◽  
Amir Monemian Esfahani ◽  
Fariba Aghabaglou ◽  
Jae Sung Park ◽  
Sidy Ndao ◽  
...  

2017 ◽  
Author(s):  
Kristina Woodruff ◽  
Sebastian J. Maerkl

ABSTRACTMammalian synthetic biology and cell biology would greatly benefit from improved methods for highly parallel transfection, culturing and interrogation of mammalian cells. Transfection is routinely performed on high-throughput microarrays, but this setup requires manual cell culturing and precludes precise control over the cell environment. As an alternative, microfluidic transfection devices streamline cell loading and culturing. Up to 280 transfections can be implemented on the chip at high efficiency. The culturing environment is tightly regulated and chambers physically separate the transfection reactions, preventing cross-contamination. Unlike typical biological assays that rely on end-point measurements, the microfluidic chip can be integrated with high-content imaging, enabling the evaluation of cellular behavior and protein expression dynamics over time.


2019 ◽  
Vol 59 (3) ◽  
pp. 1163-1171 ◽  
Author(s):  
Markus Hofmarcher ◽  
Elisabeth Rumetshofer ◽  
Djork-Arné Clevert ◽  
Sepp Hochreiter ◽  
Günter Klambauer

2005 ◽  
Vol 894 ◽  
Author(s):  
Shane Stafslien ◽  
Bret Chisholm ◽  
David Christianson ◽  
Justin Daniels ◽  
Geoffrey Swain

AbstractA combinatorial workflow for developing organic surface coatings has been developed. The workflow is uniquely designed to prepare and evaluate marine coatings that prevent biofouling on the hulls of ships. A critical component of the workflow is the high throughput screening of settlement and ease of removal of marine organisms from coating surfaces. Methods have been developed to directly and indirectly quantify marine bacterial biofilm growth and retention. Correlations have been developed between these high throughput bioassays and results from ocean testing.


Lab on a Chip ◽  
2012 ◽  
Vol 12 (12) ◽  
pp. 2146 ◽  
Author(s):  
Mira T. Guo ◽  
Assaf Rotem ◽  
John A. Heyman ◽  
David A. Weitz

2009 ◽  
Vol 105 (3) ◽  
pp. 034701 ◽  
Author(s):  
B. Hong ◽  
T. J. Hayward ◽  
J.-R. Jeong ◽  
J. F. K. Cooper ◽  
J. J. Palfreyman ◽  
...  

1996 ◽  
Vol 1 (2) ◽  
pp. 65-73 ◽  
Author(s):  
Allan M. Ferguson ◽  
David E. Patterson ◽  
Cheryl D. Garr ◽  
Ted L. Underiner

The selection of compounds for use in high throughput biological assays is one of the critical factors that dictates the likelihood of detecting exploitable biological properties. In this paper, we present a process designed to deliver molecules that contain chemical functionality of immediate value in a lead discovery program, molecules that are sufficiently different from each other to ensure that redundancy of effort is avoided. The design process has already been implemented and used to add tens of thousands of reaction products to the Optiverse™ library


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