Timing Matters: Allochronic Contributions to Population Divergence

Author(s):  
Barbara Helm ◽  
Robyn Womack
Heredity ◽  
2021 ◽  
Author(s):  
Emily H. Le Sage ◽  
Sarah I. Duncan ◽  
Travis Seaborn ◽  
Jennifer Cundiff ◽  
Leslie J. Rissler ◽  
...  

Parasitology ◽  
2013 ◽  
Vol 140 (11) ◽  
pp. 1346-1356 ◽  
Author(s):  
MATHIEU ROUDEL ◽  
JULIE AUFAUVRE ◽  
BRUNO CORBARA ◽  
FREDERIC DELBAC ◽  
NICOLAS BLOT

SUMMARYThe microsporidian parasiteNosema ceranaeis a common pathogen of the Western honeybee (Apis mellifera) whose variable virulence could be related to its genetic polymorphism and/or its polyphenism responding to environmental cues. Since the genotyping ofN. ceranaebased on unique marker sequences had been unsuccessful, we tested whether amultilocusapproach, assessing the diversity of ten genetic markers – encoding nine proteins and the small ribosomal RNA subunit – allowed the discrimination betweenN. ceranaevariants isolated from singleA. melliferaindividuals in four distant locations. High nucleotide diversity and allele content were observed for all genes. Most importantly, the diversity was mainly present within parasite populations isolated from single honeybee individuals. In contrast the absence of isolate differentiation precluded anytaxadiscrimination, even through amultilocusapproach, but suggested that similar populations of parasites seem to infect honeybees in distant locations. As statistical evolutionary analyses showed that the allele frequency is under selective pressure, we discuss the origin and consequences ofN. ceranaeheterozygosity in a single host and lack of population divergence in the context of the parasite natural and evolutionary history.


2013 ◽  
Vol 160 (5) ◽  
pp. 1285-1296 ◽  
Author(s):  
D. W. Foltz ◽  
S. D. Fatland ◽  
M. Eléaume ◽  
K. Markello ◽  
K. L. Howell ◽  
...  

2017 ◽  
Vol 108 (3) ◽  
pp. 288-298 ◽  
Author(s):  
María José Sanín ◽  
Patricia Zapata ◽  
Jean-Christophe Pintaud ◽  
Gloria Galeano ◽  
Adriana Bohórquez ◽  
...  

Evolution ◽  
2014 ◽  
Vol 68 (7) ◽  
pp. 1934-1946 ◽  
Author(s):  
Kristina Karlsson Green ◽  
Erik I. Svensson ◽  
Johannes Bergsten ◽  
Roger Härdling ◽  
Bengt Hansson

2013 ◽  
Vol 22 (22) ◽  
pp. 5531-5547 ◽  
Author(s):  
Yao Zhao ◽  
Klaas Vrieling ◽  
Hui Liao ◽  
Manqiu Xiao ◽  
Yongqing Zhu ◽  
...  

2015 ◽  
Vol 25 (21) ◽  
pp. 2819-2822 ◽  
Author(s):  
Taina Conrad ◽  
Manfred Ayasse

2021 ◽  
Vol 59 (1) ◽  
Author(s):  
Jie-Yin Chen ◽  
Steven J. Klosterman ◽  
Xiao-Ping Hu ◽  
Xiao-Feng Dai ◽  
Krishna V. Subbarao

The genomics era has ushered in exciting possibilities to examine the genetic bases that undergird the characteristic features of Verticillium dahliae and other plant pathogens. In this review, we provide historical perspectives on some of the salient biological characteristics of V. dahliae, including its morphology, microsclerotia formation, host range, disease symptoms, vascular niche, reproduction, and population structure. The kaleidoscopic population structure of this pathogen is summarized, including different races of the pathogen, defoliating and nondefoliating phenotypes, vegetative compatibility groupings, and clonal populations. Where possible, we place the characteristic differences in the context of comparative and functional genomics analyses that have offered insights into population divergence within V. dahliae and the related species. Current challenges are highlighted along with some suggested future population genomics studies that will contribute to advancing our understanding of the population divergence in V. dahliae. Expected final online publication date for the Annual Review of Phytopathology, Volume 59 is August 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.


2016 ◽  
Vol 283 (1826) ◽  
pp. 20152340 ◽  
Author(s):  
Chih-Ming Hung ◽  
Sergei V. Drovetski ◽  
Robert M. Zink

Although mitochondrial DNA (mtDNA) has long been used for assessing genetic variation within and between populations, its workhorse role in phylogeography has been criticized owing to its single-locus nature. The only choice for testing mtDNA results is to survey nuclear loci, which brings into contrast the difference in locus effective size and coalescence times. Thus, it remains unclear how erroneous mtDNA-based estimates of species history might be, especially for evolutionary events in the recent past. To test the robustness of mtDNA and nuclear sequences in phylogeography, we provide one of the largest paired comparisons of summary statistics and demographic parameters estimated from mitochondrial, five Z-linked and 10 autosomal genes of 30 avian species co-distributed in the Caucasus and Europe. The results suggest that mtDNA is robust in estimating inter-population divergence but not in intra-population diversity, which is sensitive to population size change. Here, we provide empirical evidence showing that mtDNA was more likely to detect population divergence than any other single locus owing to its smaller N e and thus faster coalescent time. Therefore, at least in birds, numerous studies that have based their inferences of phylogeographic patterns solely on mtDNA should not be readily dismissed.


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