Hybrid Parallelization of a Large-Scale Heart Model

2012 ◽  
pp. 120-132 ◽  
Author(s):  
Dorian Krause ◽  
Mark Potse ◽  
Thomas Dickopf ◽  
Rolf Krause ◽  
Angelo Auricchio ◽  
...  
Keyword(s):  
Large Scale ◽  
Heart Model ◽  
Hybrid Parallelization

scholarly journals Parallel Optimization of 3D Cardiac Electrophysiological Model Using GPU

2015 ◽  
Vol 2015 ◽  
pp. 1-10 ◽  
Author(s):  
Yong Xia ◽  
Kuanquan Wang ◽  
Henggui Zhang
Keyword(s):  
Differential Equation ◽  
Large Scale ◽  
Cell Model ◽  
Parallel Optimization ◽  
Test Bed ◽  
Heart Model ◽  
Diffusion Term ◽  
Single Cell Model ◽  
Whole Heart ◽  
Computational Resources

Large-scale 3D virtual heart model simulations are highly demanding in computational resources. This imposes a big challenge to the traditional computation resources based on CPU environment, which already cannot meet the requirement of the whole computation demands or are not easily available due to expensive costs. GPU as a parallel computing environment therefore provides an alternative to solve the large-scale computational problems of whole heart modeling. In this study, using a 3D sheep atrial model as a test bed, we developed a GPU-based simulation algorithm to simulate the conduction of electrical excitation waves in the 3D atria. In the GPU algorithm, a multicellular tissue model was split into two components: one is the single cell model (ordinary differential equation) and the other is the diffusion term of the monodomain model (partial differential equation). Such a decoupling enabled realization of the GPU parallel algorithm. Furthermore, several optimization strategies were proposed based on the features of the virtual heart model, which enabled a 200-fold speedup as compared to a CPU implementation. In conclusion, an optimized GPU algorithm has been developed that provides an economic and powerful platform for 3D whole heart simulations.

scholarly journals Hybrid parallelization strategies for large-scale machine learning in SystemML

2014 ◽  
Vol 7 (7) ◽  
pp. 553-564 ◽  
Author(s):  
Matthias Boehm ◽  
Shirish Tatikonda ◽  
Berthold Reinwald ◽  
Prithviraj Sen ◽  
Yuanyuan Tian ◽  
...  
Keyword(s):  
Machine Learning ◽  
Large Scale ◽  
Hybrid Parallelization

scholarly journals A Model Heart

2015 ◽  
Vol 137 (04) ◽  
pp. 30-35
Author(s):  
Alan S. Brown
Keyword(s):  
Finite Element ◽  
Large Scale ◽  
Three Dimensional ◽  
Heart Tissue ◽  
Heart Model ◽  
Element Mesh ◽  
Cardiovascular Devices ◽  
Three Dimensional Representation ◽  
Pacemaker Leads ◽  
Sophisticated Model

This article discusses the advantages of using a realistic simulation model of the heart. A model might help cardiologists predict how a heart condition would progress. It could provide new ways to design and approve cardiovascular devices, which rarely undergo large-scale human testing before commercialization. Surgeons could use the model to test new procedures or plan the best intervention for patients. Researchers could use it to develop better ways to image constantly beating hearts. For example, Dassault's Living Heart model is a larger-than-life three-dimensional representation that enables surgeons, researchers, and engineers to look at the human heart in different ways. The finite element mesh of the first Living Heart model contains 200,000 tetrahedral Elements connected at 50,000 finite element nodes. The Living Heart model is already suitable for testing pacemaker leads, since it needs to model only mechanical stress during motion. Projecting the progression of heart disease will require a more sophisticated model that incorporates the behavior of the underlying heart tissue.

Towards a large-scale scalable adaptive heart model using shallow tree meshes

2015 ◽  
Vol 298 ◽  
pp. 79-94 ◽  
Author(s):  
Dorian Krause ◽  
Thomas Dickopf ◽  
Mark Potse ◽  
Rolf Krause
Keyword(s):  
Large Scale ◽  
Heart Model

Some comments about observations and image processing of comet 29P/Schwassmann-Wachmann 1

1999 ◽  
Vol 173 ◽  
pp. 243-248
Author(s):  
D. Kubáček ◽  
A. Galád ◽  
A. Pravda
Keyword(s):  
Image Processing ◽  
Large Scale ◽  
Harvard College ◽  
Oak Ridge ◽  
Large Scale Structures ◽  
Short Period Comet ◽  
Short Period ◽  
Scale Structures ◽  
Harvard College Observatory ◽  
Period Comet

AbstractUnusual short-period comet 29P/Schwassmann-Wachmann 1 inspired many observers to explain its unpredictable outbursts. In this paper large scale structures and features from the inner part of the coma in time periods around outbursts are studied. CCD images were taken at Whipple Observatory, Mt. Hopkins, in 1989 and at Astronomical Observatory, Modra, from 1995 to 1998. Photographic plates of the comet were taken at Harvard College Observatory, Oak Ridge, from 1974 to 1982. The latter were digitized at first to apply the same techniques of image processing for optimizing the visibility of features in the coma during outbursts. Outbursts and coma structures show various shapes.

Evolution of Large-Scale Coronal Structures

1994 ◽  
Vol 144 ◽  
pp. 29-33
Author(s):  
P. Ambrož
Keyword(s):  
Magnetic Field ◽  
Field Line ◽  
Large Scale ◽  
Coronal Magnetic Field ◽  
Source Surface ◽  
Solar Cycles ◽  
Characteristic Relationship ◽  
The Magnetic Field ◽  
Coronal Structures

AbstractThe large-scale coronal structures observed during the sporadically visible solar eclipses were compared with the numerically extrapolated field-line structures of coronal magnetic field. A characteristic relationship between the observed structures of coronal plasma and the magnetic field line configurations was determined. The long-term evolution of large scale coronal structures inferred from photospheric magnetic observations in the course of 11- and 22-year solar cycles is described.Some known parameters, such as the source surface radius, or coronal rotation rate are discussed and actually interpreted. A relation between the large-scale photospheric magnetic field evolution and the coronal structure rearrangement is demonstrated.

Large-scale Motion of Solar Filaments

2000 ◽  
Vol 179 ◽  
pp. 205-208
Author(s):  
Pavel Ambrož ◽  
Alfred Schroll
Keyword(s):  
Magnetic Flux ◽  
Proper Motion ◽  
Time Scale ◽  
Large Scale ◽  
Accuracy Of Measurements ◽  
Solar Filaments ◽  
General Movement ◽  
Scale Motion ◽  
Velocity Scatter

AbstractPrecise measurements of heliographic position of solar filaments were used for determination of the proper motion of solar filaments on the time-scale of days. The filaments have a tendency to make a shaking or waving of the external structure and to make a general movement of whole filament body, coinciding with the transport of the magnetic flux in the photosphere. The velocity scatter of individual measured points is about one order higher than the accuracy of measurements.

Some applications of electron beam microanalysis techniques in VLSI process evaluation

1983 ◽  
Vol 41 ◽  
pp. 160-161
Author(s):  
Simon Thomas
Keyword(s):  
Integrated Circuits ◽  
Process Evaluation ◽  
Large Scale ◽  
Technology Development ◽  
Analytical Techniques ◽  
Successful Implementation ◽  
Analysis Of Failures ◽  
Characterization Of Materials ◽  
Circuits Vlsi

Trends in the technology development of very large scale integrated circuits (VLSI) have been in the direction of higher density of components with smaller dimensions. The scaling down of device dimensions has been not only laterally but also in depth. Such efforts in miniaturization bring with them new developments in materials and processing. Successful implementation of these efforts is, to a large extent, dependent on the proper understanding of the material properties, process technologies and reliability issues, through adequate analytical studies. The analytical instrumentation technology has, fortunately, kept pace with the basic requirements of devices with lateral dimensions in the micron/ submicron range and depths of the order of nonometers. Often, newer analytical techniques have emerged or the more conventional techniques have been adapted to meet the more stringent requirements. As such, a variety of analytical techniques are available today to aid an analyst in the efforts of VLSI process evaluation. Generally such analytical efforts are divided into the characterization of materials, evaluation of processing steps and the analysis of failures.

Electron microscopy study of reactively sputter-deposited Ti/N films on silicon

1992 ◽  
Vol 50 (2) ◽  
pp. 1362-1363
Author(s):  
V. C. Kannan ◽  
A. K. Singh ◽  
R. B. Irwin ◽  
S. Chittipeddi ◽  
F. D. Nkansah ◽  
...  
Keyword(s):  
Integrated Circuits ◽  
Large Scale ◽  
Hexagonal Phase ◽  
Microscopy Study ◽  
Electron Microscopy Study ◽  
Process Conditions ◽  
Tin Films ◽  
Wide Range ◽  
Fcc Phase ◽  
Circuits Vlsi

Titanium nitride (TiN) films have historically been used as diffusion barrier between silicon and aluminum, as an adhesion layer for tungsten deposition and as an interconnect material etc. Recently, the role of TiN films as contact barriers in very large scale silicon integrated circuits (VLSI) has been extensively studied. TiN films have resistivities on the order of 20μ Ω-cm which is much lower than that of titanium (nearly 66μ Ω-cm). Deposited TiN films show resistivities which vary from 20 to 100μ Ω-cm depending upon the type of deposition and process conditions. TiNx is known to have a NaCl type crystal structure for a wide range of compositions. Change in color from metallic luster to gold reflects the stabilization of the TiNx (FCC) phase over the close packed Ti(N) hexagonal phase. It was found that TiN (1:1) ideal composition with the FCC (NaCl-type) structure gives the best electrical property.

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