Differentiation of Embryonic Stem Cells into Glutamatergic Neurons (Methods)

Author(s):  
Yenshou Lin
2013 ◽  
Vol 430 (2) ◽  
pp. 604-609 ◽  
Author(s):  
Ryosuke Fujiki ◽  
Akinobu Sato ◽  
Katsuhiko Hata ◽  
Fumi Tashiro ◽  
Noriko Yasuhara ◽  
...  

F1000Research ◽  
2013 ◽  
Vol 2 ◽  
pp. 35 ◽  
Author(s):  
Kyle S Hubbard ◽  
Ian M Gut ◽  
Megan E Lyman ◽  
Patrick M McNutt

Using paired-end RNA sequencing, we have quantified the deep transcriptional changes that occur during differentiation of murine embryonic stem cells into a highly enriched population of glutamatergic cortical neurons. These data provide a detailed and nuanced account of longitudinal changes in the transcriptome during neurogenesis and neuronal maturation, starting from mouse embryonic stem cells and progressing through neuroepithelial stem cell induction, radial glial cell formation, neurogenesis, neuronal maturation and cortical patterning. Understanding the transcriptional mechanisms underlying the differentiation of stem cells into mature, glutamatergic neurons of cortical identity has myriad applications, including the elucidation of mechanisms of cortical patterning; identification of neurogenic processes; modeling of disease states; detailing of the host cell response to neurotoxic stimuli; and determination of potential therapeutic targets. In future work we anticipate correlating changes in longitudinal gene expression to other cell parameters, including neuronal function as well as characterizations of the proteome and metabolome. In this data article, we describe the methods used to produce the data and present the raw sequence read data in FASTQ files, sequencing run statistics and a summary flatfile of raw counts for 22,164 genes across 31 samples, representing 3-5 biological replicates at each timepoint. We propose that this data will be a valuable contribution to diverse research efforts in bioinformatics, stem cell research and developmental neuroscience studies.


2021 ◽  
Vol 22 (9) ◽  
pp. 4592
Author(s):  
Jen-Hua Chuang ◽  
Wen-Chin Yang ◽  
Yenshou Lin

Neurons that have been derived from various types of stem cells have recently undergone significant study due to their potential for use in various aspects of biomedicine. In particular, glutamatergic neurons differentiated from embryonic stem cells (ESCs) potentially have many applications in both basic research and regenerative medicine. This review summarized the literatures published thus far and focused on two areas related to these applications. Firstly, these neurons can be used to investigate neuronal signal transduction during differentiation and this means that the genes/proteins/markers involved in this process can be identified. In this way, the dynamic spatial and temporal changes associated with neuronal morphology can be investigated relatively easily. Such an in vitro system can also be used to study how neurons during neurogenesis integrate into normal tissue. At the same time, the integration, regulation and functions of extracellular matrix secretion, various molecular interactions, various ion channels, the neuronal microenvironment, etc., can be easily traced. Secondly, the disease-related aspects of ESC-derived glutamatergic neurons can also be studied and then applied therapeutically. In the future, greater efforts are needed to explore how ESC-differentiated glutamatergic neurons can be used as a neuronal model for the study of Alzheimer’s disease (AD) mechanistically, to identify possible therapeutic strategies for treating AD, including tissue replacement, and to screen for drugs that can be used to treat AD patients. With all of the modern technology that is available, translational medicine should begin to benefit patients soon.


2019 ◽  
Vol 127 ◽  
pp. 324-332 ◽  
Author(s):  
Hongou Wang ◽  
Lawrence Chang ◽  
Jose S. Aguilar ◽  
Sijun Dong ◽  
Yiling Hong

2011 ◽  
Vol 410 (1) ◽  
pp. 149-151 ◽  
Author(s):  
Jen-Hua Chuang ◽  
Li-Chu Tung ◽  
Guey-Jen Lee-Chen ◽  
Yi Yin ◽  
Yenshou Lin

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