Introduction to Mammalian Circadian Clock System

2020 ◽  
pp. 1-21
Author(s):  
Mengjing Zhao ◽  
Danyi Lu ◽  
Min Chen ◽  
Baojian Wu
Keyword(s):  
2004 ◽  
Vol 101 (38) ◽  
pp. 13927-13932 ◽  
Author(s):  
T. Nishiwaki ◽  
Y. Satomi ◽  
M. Nakajima ◽  
C. Lee ◽  
R. Kiyohara ◽  
...  

2013 ◽  
Vol 647 ◽  
pp. 391-395
Author(s):  
Liu Sen ◽  
Song Liu

Regulation of daily physiological functions with approximate a 24-hour periodicity, or circadian rhythms, is a characteristic of eukaryotes. So far, cyanobacteria are only known prokaryotes reported to possess circadian rhythmicity. The circadian system in cyanobacteria comprises both a post-translational oscillator (PTO) and a transcriptional/translational feedback loop (TTFL). The PTO can be reconstituted in vitro with three purified proteins (KaiA, KaiB, and KaiC) with the existence of ATP. Phase of the nanoclockwork has been associated with the phosphorylation states of KaiC, with KaiA promoting the phosphorylation of KaiC, and KaiB de-phosphorylating KaiC. Here we studied the evolution of the KaiB protein. The result will be helpful in understanding the evolution of the circadian clock system.


2009 ◽  
Vol 11 (2) ◽  
pp. 215-220 ◽  
Author(s):  
Giovanni Severino ◽  
Mirko Manchia ◽  
Paolo Contu ◽  
Alessio Squassina ◽  
Simona Lampus ◽  
...  

2011 ◽  
Vol 76 (3) ◽  
pp. 453-456 ◽  
Author(s):  
Khaled Sadek ◽  
Nick Macklon ◽  
Kim Bruce ◽  
Felino Cagampang ◽  
Ying Cheong

2021 ◽  
Author(s):  
Nickie Safarian ◽  
Sarah Houshangi-Tabrizi ◽  
Christiane Zoidl ◽  
Georg Zoidl

Pannexin1 (Panx1) can form ATP-permeable integral membrane channels that play roles in the physiology of the visual system. Two independent gene copies of Panx1, panx1a and panx1b, have been identified in the zebrafish with unique and shared properties and tissue expression patterns. Panx1a channels, located in horizontal cells of the outer retina, modulate light decrement detection through an ATP/pH-dependent mechanisms and adenosine/dopamine signaling. Here, we decipher how the strategic localization of Panx1b channels in the inner retina and ganglion cell layer modulates visually evoked motor behavior. We describe a panx1b knockout model generated by TALEN technology. The RNA-seq analysis of 6 days post-fertilization larvae is confirmed by Real-Time PCR and paired with testing of visual-motor behaviors. The Panx1b protein emerges as a modulator of the circadian clock system. The loss of panx1b also disrupts the retinal response to the abrupt loss of illumination and decreases the larval ability to follow leftward direction of motion in the dark. The evidence suggests that in the retina Panx1b contributes to the OFF pathways function, like Panx1a, though through different signaling mechanisms. In this process, the loss of Panx1b channels compromises the final output of luminance as well as direction of motion detector RGCs. In addition, the disruption of the circadian clock system in mutants suggests that Panx1b could participate in non-image forming processes in the inner retina.


2018 ◽  
Vol 470 (2) ◽  
pp. 227-239 ◽  
Author(s):  
Violetta Pilorz ◽  
Charlotte Helfrich-Förster ◽  
Henrik Oster
Keyword(s):  

2021 ◽  
Author(s):  
Yoshihiko Furuike ◽  
Dongyan Ouyang ◽  
Taiki Tominaga ◽  
Tatsuhito Matsuo ◽  
Atsushi Mukaiyama ◽  
...  

Clock proteins maintain constant enzymatic activity regardless of temperature, even though thermal fluctuation is accelerated as temperature increases. We investigated temperature influences on the dynamics of KaiC, a temperature-compensated ATPase in the cyanobacterial circadian clock system, using quasielastic neutron scattering. The frequency of picosecond to sub-nanosecond incoherent local motions in KaiC was accelerated very slightly in a temperature-dependent manner. Our mutation studies revealed that internal motions of KaiC include several contributions of opposing temperature sensitivities. To take advantage of this balancing effect, the motional frequency of local dynamics in KaiC needs to exceed ~0.3 ps-1. Some of the mutation sites may be in a pathway through which the motional frequency in the C-terminal domain of KaiC is fed back to the active site of ATPase in its N-terminal domain. The temperature-compensating ability at the dynamics level is likely crucial for circadian clock systems, into which the clock proteins are incorporated, to achieve reaction- or even system-level temperature compensation of the oscillation frequency.


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