scholarly journals Ecological Processes Shaping Bulk Soil and Rhizosphere Microbiome Assembly in a Long-Term Amazon Forest-to-Agriculture Conversion

2019 ◽  
Vol 79 (1) ◽  
pp. 110-122 ◽  
Author(s):  
Dennis Goss-Souza ◽  
Lucas William Mendes ◽  
Jorge Luiz Mazza Rodrigues ◽  
Siu Mui Tsai
Keyword(s):  
Bulk Soil ◽  
Amazon Forest ◽  
Ecological Processes ◽  
Rhizosphere Microbiome ◽  
Microbiome Assembly

scholarly journals Urban Ecological Restoration

2010 ◽  
Vol 5 (3) ◽  
pp. 227-230 ◽  
Author(s):  
Paul H. Gobster
Keyword(s):  
Ecological Restoration ◽  
Urban Areas ◽  
Indigenous Species ◽  
Reference Sites ◽  
Urban Context ◽  
Ecological Processes ◽  
Fixed Set ◽  
Natural Diversity ◽  
Urban Ecological Restoration

What does ecological restoration mean in an urban context? More than half of the world’s population now lives in cities, and in response to the dynamic patterns of urbanization, a growing number of ecologists, land managers, and volunteers are focusing their efforts in and around cities to restore remnants of natural diversity (Ingram 2008). Ecological restoration is still a quite youthful field, yet many scientists and practitioners hold a relatively fixed set of criteria for what defines a successful restoration project, irrespective of where sites are located. Among the criteria commonly stated, sites should be composed of indigenous species, have a structure and diversity characteristic of currently undisturbed or historically documented “reference” sites, and be maintained through ecological processes such as fire that ensure long-term sustainability with minimal human assistance (Ruiz-Jaén and Aide 2005; SER International 2004). Application of these criteria has led to many ecologically successful restorations, but some ecologists in the field have begun to question whether the same standards can be realistically applied to sites such as those within urban areas that have been radically altered by past human activity (e.g., Martínez and López-Barerra 2008) or are being influenced by novel conditions that result in unpredictable trajectories (Choi 2007). Perhaps more significantly, it is becoming increasingly recognized that the broader viability of restoration projects, especially those in urban areas, hinges on how socially successful they are in gaining public acceptance for restoration activities and practices, building constituencies to assist with implementation and maintenance, and addressing a broader set of sustainability goals that reach beyond the protection of native biodiversity (e.g., Choi et al. 2008; Hobbs 2007; Rosenzweig 2003).

scholarly journals Long-term UVB exposure promotes predator-inspection behaviour in a fish

2017 ◽  
Vol 13 (12) ◽  
pp. 20170497 ◽  
Author(s):  
Simon Vitt ◽  
Janina E. Zierul ◽  
Theo C. M. Bakker ◽  
Ingolf P. Rick
Keyword(s):  
Gasterosteus Aculeatus ◽  
Stratospheric Ozone ◽  
Ultraviolet B ◽  
Antipredator Behaviour ◽  
Uvb Radiation ◽  
Ecological Processes ◽  
Predator Prey ◽  
Natural Sunlight ◽  
Predator Inspection

Ultraviolet-B radiation (UVB) reaching the earth's surface has increased due to human-caused stratospheric ozone depletion. Whereas the harmful effects of UVB on aquatic organisms are well studied at the molecular and cellular level, recent studies have also begun to address behavioural changes caused by sublethal amounts of UVB. However, the behavioural consequences of long-term exposure to ecologically relevant UVB levels over several life stages are virtually unknown, particularly with regard to predator–prey behaviour. We found increased predator-inspection behaviour together with a smaller body length in three-spined sticklebacks ( Gasterosteus aculeatus ) after fish were exposed for about seven months to natural sunlight conditions with enhanced UVB, compared with full siblings exposed to natural sunlight only. The observed change in antipredator behaviour may reflect a direct behavioural response mediated through UVB-induced oxidative stress during development. Alternatively, the smaller body size in UVB-exposed fish may result in an increased inspection effort allowing them to spend more time foraging. Our findings suggest that, within the scope of environmental change, UVB radiation constitutes an important stress factor by eliciting behavioural responses that influence crucial ecological processes, such as predator–prey interactions.

scholarly journals A floristic description of the Afromontane fynbos communities on Platberg, Eastern Free State, South Africa

Koedoe ◽  
2008 ◽  
Vol 50 (1) ◽  
Author(s):  
Robert F. Brand ◽  
Pieter J. Du Preez ◽  
Leslie R. Brown
Keyword(s):  
Natural Resources ◽  
Plant Communities ◽  
Conservation Management ◽  
Alien Invasive Species ◽  
Ecological Processes ◽  
The North ◽  
Shrub Community ◽  
Management Plans ◽  
Twinspan Classification

Within the Platberg area and the wider Drakensberg region, the shrinking natural resources and the threat posed to biodiversity are of concern to conservation management and require an understanding of long-term ecological processes. The vegetation of Platberg was investigated as part of an ecological survey to establish Afromontane floristic links to the Drakensberg as well as for the management of natural resources. From a TWINSPAN classification, refined by the Braun-Blanquet method, four main plant communities were identified, which were subdivided into fynbos, wetland, a woody/shrub community and grassland. A classification and description of the fynbos are presented in this article.The analysis showed the fynbos divided into two communities comprising four sub-communities and seven variants. The fynbos community had an average of 28.34 species per relevé, ranging from 14 to 54 species per sample plot. Twenty-four endemic or near-endemic Drakensberg Alpine Centre (DAC) species and 22 exotic (alien-invasive) species were recorded. Numerous floristic links with the DAC, Cape flora fynbos and grassland bioregions to the north and west were also found. The description of the fynbos plant communities can serve as a basis for the formulation of management plans for the area.

scholarly journals Predominance of soil vs root effect in rhizosphere microbiota reassembly

2019 ◽  
Vol 95 (10) ◽  
Author(s):  
Mengli Zhao ◽  
Jun Yuan ◽  
Zongzhuan Shen ◽  
Menghui Dong ◽  
Hongjun Liu ◽  
...  
Keyword(s):  
Bacterial Communities ◽  
Disease Incidence ◽  
Bulk Soil ◽  
Pathogen Population ◽  
Root Effect ◽  
Rhizosphere Microbiome ◽  
Distinct Disease ◽  
Pathogenic Microbes ◽  
Disease Suppressive Soil ◽  
Rhizosphere Community

ABSTRACT Rhizosphere community assembly is simultaneously affected by both plants and bulk soils and is vital for plant health. However, it is still unclear how and to what extent disease-suppressive rhizosphere microbiota can be constructed from bulk soil, and the underlying agents involved in the process that render the rhizosphere suppressive against pathogenic microbes remain elusive. In this study, the evolutionary processes of the rhizosphere microbiome were explored based on transplanting plants previously growing in distinct disease-incidence soils to one disease-suppressive soil. Our results showed that distinct rhizoplane bacterial communities were assembled on account of the original bulk soil communities with different disease incidences. Furthermore, the bacterial communities in the transplanted rhizosphere were noticeably influenced by the second disease-suppressive microbial pool, rather than that of original formed rhizoplane microbiota and homogenous nontransplanted rhizosphere microbiome, contributing to a significant decrease in the pathogen population. In addition, Spearman's correlations between relative abundances of bacterial taxa and the abundance of Ralstonia solanacearum indicated Anoxybacillus, Flavobacterium, Permianibacter and Pseudomonas were predicted to be associated with disease-suppressive function formation. Altogether, our results showed that bulk soil played an important role in the process of assembling and reassembling the rhizosphere microbiome of plants.

scholarly journals A vegetation description and floristic analyses of the springs on the Kammanassie Mountain, Western Cape

Koedoe ◽  
2004 ◽  
Vol 47 (2) ◽  
Author(s):  
G. Cleaver ◽  
L.R. Brown ◽  
G.J. Bredenkamp
Keyword(s):  
Plant Communities ◽  
Western Cape ◽  
Ecological Processes ◽  
Mountain Catchment ◽  
Habitat Factors ◽  
Management Plans ◽  
Twinspan Classification ◽  
Geological Origin ◽  
The Difference

The Kammanassie Mountain is a declared mountain catchment area and a Cape mountain zebra Equus zebra zebra population is preserved on the mountain. The high number of springs on the mountain not only provides water for the animal species but also contributes to overall ecosystem functioning. Long-term conservation of viable ecosystems requires a broader understanding of the ecological processes involved. It was therefore decided that a classification, description and mapping of the spring vegetation of the Kammanassie Mountain be undertaken. A TWINSPAN classification, refined by Braun-Blanquet procedures, revealed 11 major plant communities that could be related to geological origin. Habitat factors associated with differences in vegetation include topography, soil type and grazing. Descriptions of the plant communities include diagnostic species as well as prominent and less conspicuous species of the tree, shrub and herbaceous layers. The results also indicate a high species richness compared to similar regions and the difference between plant communities of wet and dry springs. This data is important for long-term monitoring of the spring ecosystems as well as for the compilation of management plans.

scholarly journals Ant nests as a microbial hot spots in a long-term heavy metal-contaminated soils

2021 ◽  
Author(s):  
Beata Klimek ◽  
Hanna Poliwka-Modliborek ◽  
Irena M. Grześ
Keyword(s):  
Microbial Biomass ◽  
Microbial Activity ◽  
Respiration Rate ◽  
Metal Content ◽  
Soil Microbial Activity ◽  
Bulk Soil ◽  
Lasius Niger ◽  
Soil Microbial ◽  
Ant Nests

AbstractInteractions between soil fauna and soil microorganisms are not fully recognized, especially in extreme environments, such as long-term metal-polluted soils. The purpose of the study was to assess how the presence of Lasius niger ants affected soil microbial characteristics in a long-term metal-polluted area (Upper Silesia in Poland). Paired soil samples were taken from bulk soil and from ant nests and analysed for a range of soil physicochemical properties, including metal content (zinc, cadmium, and lead). Microbial analysis included soil microbial activity (soil respiration rate), microbial biomass (substrate-induced respiration rate), and bacteria catabolic properties (Biolog® ECO plates). Soil collected from ant nests was drier and was characterized by a lower content of organic matter, carbon and nitrogen contents, and also lower metal content than bulk soil. Soil microbial respiration rate was positively related to soil pH (p = 0.01) and negatively to water-soluble metal content, integrated into TIws index (p = 0.01). Soil microbial biomass was negatively related to TIws index (p = 0.04). Neither soil microbial activity and biomass nor bacteria catabolic activity and diversity indices differed between bulk soil and ant nests. Taken together, ant activity reduced soil contamination by metals in a microscale which support microbial community activity and biomass but did not affect Biolog® culturable bacteria.

Cutthroat Trout: Evolutionary Biology and Taxonomy

2018 ◽  
Keyword(s):  
Evolutionary Biology ◽  
Species Concept ◽  
Management Strategies ◽  
Cutthroat Trout ◽  
Ecological Processes ◽  
Oncorhynchus Clarkii ◽  
Voucher Specimens ◽  
Captive Propagation ◽  
Analytical Tools

<em>Abstract</em>.—The broad distribution and regional variation of Cutthroat Trout <em>Oncorhynchus clarkii </em>across western North America has led to considerable interest in the different forms from both scientific and recreational perspectives. This volume represents an attempt to describe this observed diversity with the most current information available and suggests a revised taxonomy for Cutthroat Trout. However, what is proposed in this volume will be subject to change or refinement as new techniques and analytical tools become available. In particular, remaining uncertainty would benefit from a comparison of all described lineages with a common set of morphological and genetic markers. A range-wide collection of voucher specimens will help to document variation in these characteristics, and we encourage field biologists to prioritize these collections. Future revisions will benefit from agreement on a species concept and explicitly state the assumptions of the chosen species concept. We encourage collaboration between managers and taxonomists to accurately delineate units of conservation that can be used by decision makers tasked with ensuring the long-term persistence of Cutthroat Trout lineages. The proposed taxonomic revisions herein validate many of the ongoing management strategies to conserve Cutthroat Trout, but we advise additional consideration of life-history diversity as an attainable management target. For long-term persistence of all Cutthroat Trout, maintaining and expanding the availability of high quality, well-connected stream and lake habitats will be a necessary first step to achieving desired conservation outcomes. Moreover, restoring and protecting ecological processes are key to conserving the diversity found within and among lineages of Cutthroat Trout. In systems where native Cutthroat Trout have been extirpated or suppressed, captive propagation and translocation are two potentially available tools to re-establish or reinvigorate populations. Last, we encourage fisheries managers and taxonomists to embrace the challenges that come with conserving locally unique forms of wide-ranging species like Cutthroat Trout.

The Ecology and Management of Wood in World Rivers

2003 ◽  
Keyword(s):  
Land Management ◽  
Management Practices ◽  
Riparian Forests ◽  
Floodplain Forests ◽  
Large Wood ◽  
Ecological Processes ◽  
Rivers And Streams ◽  
World Rivers ◽  
Continuous Source

<em>Abstract.</em>—Riparian and floodplain forests are vital components of landscapes. They are transitional zones (ecotones) between river and upland ecosystems where ecological processes occurring in riparian areas and floodplains connect and interact with those of rivers and streams. These forests are the major source of large wood for streams and rivers. Extensive loss of riparian and floodplain forests around the globe is evident from the dramatically reduced supply of large wood in rivers. Clearly, it is necessary to conserve and restore riparian forests to sustain a supply of wood for rivers. This chapter discusses river and land management practices that are designed to provide a continuous source of large wood for rivers and retain wood once it has entered the channel or floodplain. These management practices include conservation of intact riparian and floodplain forests, restoration of ecological processes necessary to sustain riparian forests in the long term, and management of riparian forests specifically to accelerate recruitment of large wood to rivers and streams.

scholarly journals The Response of the Soil Microbiota to Long-Term Mineral and Organic Nitrogen Fertilization is Stronger in the Bulk Soil than in the Rhizosphere

Genes ◽  
2020 ◽  
Vol 11 (4) ◽  
pp. 456 ◽  
Author(s):  
Massimiliano Cardinale ◽  
Stefan Ratering ◽  
Aitak Sadeghi ◽  
Sushil Pokhrel ◽  
Bernd Honermeier ◽  
...  
Keyword(s):  
N Fertilization ◽  
16S Rrna Genes ◽  
Bulk Soil ◽  
Rrna Genes ◽  
Soil Microbiome ◽  
Future Research ◽  
Arable Soils ◽  
Mineral N ◽  
Bacterial Microbiota

The effects of different agronomic practices, such as fertilization regimes, can be experimentally tested in long-term experiments (LTE). Here, we aimed to evaluate the effect of different nitrogen fertilizations on the bacterial microbiota in both rhizosphere and bulk soil of sugar beet, in the Giessen-LTE (Germany). Fertilization treatments included mineral-N, manure, mineral-N + manure and no N-amendment. Metabarcoding and co-occurrence analysis of 16S rRNA genes, qPCR of amoA, nirK, nirS, nosZ-I and nosZ-II genes and soil physico-chemical analyses were performed. The effect of the fertilization treatments was more evident in the bulk soil, involving 33.1% of the microbiota. Co-occurrence analysis showed a rhizosphere cluster, dominated by Proteobacteria, Actinobacteria and Verrucomicrobia (hub taxa: Betaproteobacteriales), and a bulk soil cluster, dominated by Acidobacteria, Gemmatominadetes and “Latescibacteria” (hub taxa: Acidobacteria). In the bulk soil, mineral N-fertilization reduced nirK, amoA, nosZ-I and nosZ-II genes. Thirteen Operational taxonomic units (OTUs) showed 23 negative correlations with gene relative abundances. These OTUs likely represent opportunistic species that profited from the amended mineral-N and outgrew the species carrying N-cycle genes. Our results indicate trajectories for future research on soil microbiome in LTE and add new experimental evidence that will be helpful for sustainable management of nitrogen fertilizations on arable soils.

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