Genome-wide analysis of AP2/ERF transcription factors in carrot (Daucus carota L.) reveals evolution and expression profiles under abiotic stress

2015 ◽  
Vol 290 (6) ◽  
pp. 2049-2061 ◽  
Author(s):  
Meng-Yao Li ◽  
Zhi-Sheng Xu ◽  
Ying Huang ◽  
Chang Tian ◽  
Feng Wang ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Abiotic Stress ◽  
Daucus Carota ◽  
Expression Profiles ◽  
Daucus Carota L ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
Erf Transcription Factors

scholarly journals Genome-wide investigation of the AP2/ERF gene family in  ginger: evolution and expression profiles during rhizome and inflorescence development

2021 ◽  
Author(s):  
Haitao Xing ◽  
Yusong Jiang ◽  
Xiaoling Long ◽  
Xiaoli Wu ◽  
Yun Ren ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Expression Profiles ◽  
Expression Patterns ◽  
Whole Genome Sequence ◽  
Chromosomal Distribution ◽  
Inflorescence Development ◽  
Systematic Analysis ◽  
Genome Wide ◽  
A Genome ◽  
Erf Transcription Factors

Abstract Background:AP2/ERF transcription factors perform indispensable functions in various biological processes, such as plant growth, development, biotic and abiotic stresses responses. The AP2/ERF transcription factor family has been identified in many plants, and several AP2/ERF transcription factors from Arabidopsis (Arabidopsis thaliana) have been functionally characterized. However, little research has been conducted on the AP2/ERF genes of ginger (Zingiber officinale), which is an important edible and medicinal horticultural plant. The recently published whole genome sequence of ginger allowed us to study the tissue and expression profiles of AP2/ERF genes in ginger on a genome-wide basis.Results:In this study, 163 AP2/ERF genes of ginger (ZoAP2/ERF) were identified and renamed according to the chromosomal distribution of the ZoAP2/ERF genes. According to the number conserved domains and gene structure, the AP2/ERF genes were divided into three subfamilies by phylogenetic analysis, namely, AP2 (35 members), ERF (125 members) and RAV (3 members). A total of 10 motifs were detected in ginger AP2/ERF genes, and some of the unique motifs were found to be important for the function of ZoAP2/ERF genes.Conclusion:A comprehensive analysis of AP2/ERF gene expression patterns in different tissues and rhizome development stages by transcriptom sequence and quantitative real-time PCR (qRT-PCR) showed that they played an important role in the growth and development of ginger, and genes that might regulate rhizome and flower development were preliminarily identified. This systematic analysis establishes a foundation for further studies of the functional characteristics of ZoAP2/ERF genes and improvement of ginger.

scholarly journals Genome-wide analysis of AP2/ERF transcription factors family in Brassica napus

2020 ◽  
Vol 26 (7) ◽  
pp. 1463-1476 ◽  
Author(s):  
Razieh Ghorbani ◽  
Zahra Zakipour ◽  
Abbas Alemzadeh ◽  
Hooman Razi
Keyword(s):  
Transcription Factors ◽  
Brassica Napus ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
Erf Transcription Factors

Dof transcription factors in carrot: genome-wide analysis and their response to abiotic stress

2015 ◽  
Vol 38 (1) ◽  
pp. 145-155 ◽  
Author(s):  
Wei Huang ◽  
Ying Huang ◽  
Meng-yao Li ◽  
Feng Wang ◽  
Zhi-sheng Xu ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Abiotic Stress ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
Dof Transcription Factors
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