Dof transcription factors in carrot: genome-wide analysis and their response to abiotic stress

2015 ◽  
Vol 38 (1) ◽  
pp. 145-155 ◽  
Author(s):  
Wei Huang ◽  
Ying Huang ◽  
Meng-yao Li ◽  
Feng Wang ◽  
Zhi-sheng Xu ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Abiotic Stress ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
Dof Transcription Factors

Genome-wide analysis of the Dof transcription factors in castor bean (Ricinus communis L.)

2014 ◽  
Vol 36 (4) ◽  
pp. 527-537 ◽  
Author(s):  
Zhengwei Jin ◽  
Umashankar Chandrasekaran ◽  
Aizhong Liu
Keyword(s):  
Transcription Factors ◽  
Castor Bean ◽  
Ricinus Communis ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
Ricinus Communis L ◽  
Dof Transcription Factors

Genome-wide analysis of NAC transcription factors and their response to abiotic stress in celery (Apium graveolens L.)

2020 ◽  
Vol 84 ◽  
pp. 107186 ◽  
Author(s):  
Ao-Qi Duan ◽  
Xiao-Lan Yang ◽  
Kai Feng ◽  
Jie-Xia Liu ◽  
Zhi-Sheng Xu ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Abiotic Stress ◽  
Apium Graveolens ◽  
Nac Transcription Factors ◽  
Genome Wide Analysis ◽  
Genome Wide

scholarly journals Genome-wide analysis of the Dof gene family in durian reveals fruit ripening-associated and cultivar-dependent Dof transcription factors

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Gholamreza Khaksar ◽  
Wassakarn Sangchay ◽  
Pinnapat Pinsorn ◽  
Lalida Sangpong ◽  
Supaart Sirikantaramas
Keyword(s):  
Transcription Factors ◽  
Gene Family ◽  
Fruit Ripening ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
Dof Transcription Factors

scholarly journals Genome-wide analysis of basic helix-loop-helix (bHLH) transcription factors in papaya (Carica papaya L.)

2019 ◽  
Author(s):  
Min Yang ◽  
Hu Yang ◽  
Ruibin Kuang ◽  
Chenping Zhou ◽  
Bingxiong Huang ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Abiotic Stress ◽  
Carica Papaya ◽  
Genome Wide Analysis ◽  
Cis Element ◽  
Helix Loop Helix ◽  
Genome Wide ◽  
Gene Structures ◽  
Bhlh Transcription Factors ◽  
Bhlh Proteins

Abstract Background : As a superfamily of transcription factors (TFs), the basic helix-loop-helix (bHLH) proteins have been identified and functionally characterized in many plants. However, no comprehensive analysis of the bHLH family in papaya ( Carica papaya L. ) has been reported previously. Results: In this study, a total of 73 CpbHLH genes were found in papaya, and these genes were classified into 18 subfamilies based on phylogenetic analysis, with one orphans. Almost all of the CpbHLH in the same subfamily shared similar gene structures and protein motifs according to an analysis of exon/intron organizations and motif compositions. The number of exons in CpbHLH genes varied from 1 to 11 with an average of 5. The amino acid sequences of the bHLH domains were quite conservative, especially Leu-27 and Leu-63. Promoter cis -element analysis revealed that most of the CpbHLH genes contained cis -elements that can respond to various biotic/abiotic stress-related events. Gene ontology (GO) analysis revealed that Cp bHLH mainly functions in protein dimerization activity and DNA-binding, and most Cp bHLH proteins were predicted to localize in the nucleus. Abiotic stress treatment and quantitative real-time PCR (qRT-PCR) revealed some predicted CpbHLH genes that might be responsible for abiotic stress responses in papaya. Conclusions : A total of 73 bHLH transcription factors were identified from papaya, and their gene structures, conserved domains, sequence features, phylogenetic relationship, promoter cis -element, GO annotation and gene expression profiles responsible for abiotic stress were investigated. Our findings lay a foundation for further evolutionary and functional elucidation of Cp bHLHs. Keywords : papaya, genome-wide analysis, bHLH transcription factors, abiotic stress

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