DNA marker-based auditing of genetic diversity and population structuring of Indian mango (Mangifera indica L.) elites

Author(s):  
Ram Chandra Jena ◽  
Pradeep Kumar Chand
Genetika ◽  
2013 ◽  
Vol 45 (2) ◽  
pp. 527-536 ◽  
Author(s):  
N.B. Singh ◽  
S. Joshi ◽  
P. Choudhary ◽  
J.P. Sharma

Around 100 clones of tree willows were subjected for nursery screening twice on morphometric traits. Genetic diversity was assessed in twenty-five genetically superior willow clones hailing from six countries using 16 SSR primers. Fourteen primers amplified the DNA but only ten showed polymorphism. Total 34 bands were scored, out of that 27 were found to be polymorphic and 7 were monomorphic. Three primers showed 100% polymorphism whereas 79.4% polymorphism was recorded in total. The dendrogram obtained from SSR markers revealed that clone SE-69-002 (S. matsudana) and NZ-1040 (S. matsudana X S. alba) as most similar clones (Jaccards coefficient of 0.97), and clone PN-721(S. matsudana X S. alba) and PN-731 (S. nigra), as most divergent clones (Jaccards coefficient of 0.63). All the genotypes were grouped into 4 distinct clusters. On the basis of similarity coefficient analysis the first cluster comprised of 11 genotypes, the second cluster have 8 genotypes where as third one has only one genotype and fourth cluster retained five genotypes. The clustering pattern further indicated that the geographic distribution may not be the reflection of genetic diversity in willow clones. Genotypes with high molecular diversity could be used in breeding programme in order to obtain heterotic hybrids and development of gene pools with broad genetic base. The genotype specific bands developed by the SSR primers could also be used for identification of cultivar.


HortScience ◽  
2018 ◽  
Vol 53 (9) ◽  
pp. 1266-1270 ◽  
Author(s):  
Nader R. Abdelsalam ◽  
Hayssam M. Ali ◽  
Mohamed Z.M. Salem ◽  
Elsayed G. Ibrahem ◽  
Mohamed S. Elshikh

Mango (Mangifera indica L.) is a fruit crops belong to the family Anacardiaceae and is the oldest cultivated tree worldwide. Cultivars maintained in Egypt have not been investigated previously. Mango was first brought to Egypt from South Asia. Morphological and molecular techniques were used to identify the genetic diversity within 28 mango cultivars. SSR and EST-SSR were used for optimizing germplasm management of mango cultivars. Significant variations were observed in morphological characteristics and genetic polymorphism, as they ranged from 0.71% to 100%. High diversity was confirmed as a pattern of morphological and genotypes data. Data from the present study may be used to calculate the mango relationship and diversity currently grown in Egypt.


2011 ◽  
Vol 278 (1721) ◽  
pp. 3152-3160 ◽  
Author(s):  
Marie-Pierre Chapuis ◽  
Julie-Anne M. Popple ◽  
Karine Berthier ◽  
Stephen J. Simpson ◽  
Edward Deveson ◽  
...  

Linking demographic and genetic dispersal measures is of fundamental importance for movement ecology and evolution. However, such integration can be difficult, particularly for highly fecund species that are often the target of management decisions guided by an understanding of population movement. Here, we present an example of how the influence of large population sizes can preclude genetic approaches from assessing demographic population structuring, even at a continental scale. The Australian plague locust, Chortoicetes terminifera , is a significant pest, with populations on the eastern and western sides of Australia having been monitored and managed independently to date. We used microsatellites to assess genetic variation in 12 C. terminifera population samples separated by up to 3000 km. Traditional summary statistics indicated high levels of genetic diversity and a surprising lack of population structure across the entire range. An approximate Bayesian computation treatment indicated that levels of genetic diversity in C. terminifera corresponded to effective population sizes conservatively composed of tens of thousands to several million individuals. We used these estimates and computer simulations to estimate the minimum rate of dispersal, m , that could account for the observed range-wide genetic homogeneity. The rate of dispersal between both sides of the Australian continent could be several orders of magnitude lower than that typically considered as required for the demographic connectivity of populations.


2010 ◽  
Vol 61 (8) ◽  
pp. 918 ◽  
Author(s):  
Meaghan L. Rourke ◽  
Helen C. McPartlan ◽  
Brett A. Ingram ◽  
Andrea C. Taylor

Stocking wild fish populations with hatchery-bred fish has numerous genetic implications for fish species worldwide. In the present study, 16 microsatellite loci were used to determine the genetic effects of nearly three decades of Murray cod (Maccullochella peelii peelii) stocking in five river catchments in southern Australia. Genetic parameters taken from scale samples collected from 1949 to 1954 before the commencement of stocking were compared with samples collected 16 to 28 years after stocking commenced, and with samples from a local hatchery that supplements these catchments. Given that the five catchments are highly connected and adult Murray cod undertake moderate migrations, we predicted that there would be minimal population structuring of historical samples, whereas contemporary samples may have diverged slightly and lost genetic diversity as a result of stocking. A Bayesian Structure analysis indicated genetic homogeneity among the catchments both pre- and post-stocking, indicating that stocking has not measurably impacted genetic structure, although allele frequencies in one catchment changed slightly over this period. Current genetic diversity was moderately high (HE = 0.693) and had not changed over the period of stocking. Broodfish had a similar level of genetic diversity to the wild populations, and effective population size had not changed substantially between the two time periods. Our results may bode well for stocking programs of species that are undertaken without knowledge of natural genetic structure, when river connectivity is high, fish are moderately migratory and broodfish are sourced locally.


2009 ◽  
Vol 7 (03) ◽  
pp. 244-251 ◽  
Author(s):  
Didiana Gálvez-López ◽  
Sanjuana Hernández-Delgado ◽  
Maurilio González-Paz ◽  
Enrique Noe Becerra-Leor ◽  
Miguel Salvador-Figueroa ◽  
...  

Genetic diversity and relationships among 112 mango (Mangifera indica) plants native to 16 states of Mexico and four controls [three mango cultivars (Ataulfo, Manila and Tommy Atkins) and one accession ofMangifera odorata] were evaluated based on amplified fragment length polymorphism (AFLP) and simple sequence repeat (SSR) molecular markers. Mango germplasm shows broad dispersion through Mexico and genetically similar germplasm from different agroecological regions has previously been found by our group. Both AFLP and SSR analyses indicated high genetic similarity among mango populations that were clustered in two major groups: mangos from Gulf of Mexico coastline and mangos from Pacific Ocean coastline and locations far away from the sea. The highest genetic diversity was found within plants from each state, and significant genetic differentiation (FST = 0.1921, AFLPs and 0.1911, SSRs) was also observed among mango populations based on geographical origin and genetic status (cultivars versus landraces). Heterozygosity values ranged from low (0.38) to moderate (0.68), and no heterozygote deficits were found. The highest genetic variability was found in mango populations from Tabasco, Michoacán and Oaxaca. Data suggested that mangoes are subjected to natural or induced pollination, so segregation as well as genetic recombination plays major roles on genetic diversification of Mexican mangos. AFLP analysis was more robust than SSR for determining the genetic relationships among mango landraces from Mexico.


The Nucleus ◽  
2013 ◽  
Vol 56 (1) ◽  
pp. 15-21 ◽  
Author(s):  
Khedasana Rajkumari ◽  
Santosh Kumar Sharma ◽  
Satyawada Rama Rao
Keyword(s):  

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