Energetic cost of girdling in a notodontid caterpillar, Oedemasia leptinoides

2021 ◽  
Vol 15 (2) ◽  
pp. 161-170
Author(s):  
Brianna K. Trejo ◽  
Matthew E. Gifford ◽  
David E. Dussourd
Keyword(s):  
2020 ◽  
Author(s):  
Julia Villalva ◽  
Belén Nieto-Ortega ◽  
Manuel Melle-Franco ◽  
Emilio Pérez

The motion of molecular fragments in close contact with atomically flat surfaces is still not fully understood. Does a more favourable interaction imply a larger barrier towards motion even if there are no obvious minima? Here, we use mechanically interlocked rotaxane-type derivatives of SWNTs (MINTs) featuring four different types of macrocycles with significantly different affinities for the SWNT thread as models to study this problem. Using molecular dynamics, we find that there is no direct correlation between the interaction energy of the macrocycle with the SWNT and its ability to move along or around it. Density functional tight-binding calculations reveal small (<2.5 Kcal·mol-1) activation barriers, the height of which correlates with the commensurability of the aromatic moieties in the macrocycle with the SWNT. Our results show that macrocycles in MINTs rotate and translate freely around and along SWNTs at room temperature, with an energetic cost lower than the rotation around the C−C bond in ethane.<br>


2019 ◽  
Author(s):  
Maximiliano Riquelme ◽  
Esteban Vöhringer-Martinez

In molecular modeling the description of the interactions between molecules forms the basis for a correct prediction of macroscopic observables. Here, we derive atomic charges from the implicitly polarized electron density of eleven molecules in the SAMPL6 challenge using the Hirshfeld-I and Minimal Basis Set Iterative Stockholder(MBIS) partitioning method. These atomic charges combined with other parameters in the GAFF force field and different water/octanol models were then used in alchemical free energy calculations to obtain hydration and solvation free energies, which after correction for the polarization cost, result in the blind prediction of the partition coefficient. From the tested partitioning methods and water models the S-MBIS atomic charges with the TIP3P water model presented the smallest deviation from the experiment. Conformational dependence of the free energies and the energetic cost associated with the polarization of the electron density are discussed.


Quaternary ◽  
2021 ◽  
Vol 4 (1) ◽  
pp. 7
Author(s):  
Miki Ben-Dor ◽  
Ran Barkai

We hypothesize that megafauna extinctions throughout the Pleistocene, that led to a progressive decline in large prey availability, were a primary selecting agent in key evolutionary and cultural changes in human prehistory. The Pleistocene human past is characterized by a series of transformations that include the evolution of new physiological traits and the adoption, assimilation, and replacement of cultural and behavioral patterns. Some changes, such as brain expansion, use of fire, developments in stone-tool technologies, or the scale of resource intensification, were uncharacteristically progressive. We previously hypothesized that humans specialized in acquiring large prey because of their higher foraging efficiency, high biomass density, higher fat content, and the use of less complex tools for their acquisition. Here, we argue that the need to mitigate the additional energetic cost of acquiring progressively smaller prey may have been an ecological selecting agent in fundamental adaptive modes demonstrated in the Paleolithic archaeological record. We describe several potential associations between prey size decline and specific evolutionary and cultural changes that might have been driven by the need to adapt to increased energetic demands while hunting and processing smaller and smaller game.


2021 ◽  
Author(s):  
Thomas Ruiz ◽  
Apostolos‐Manuel Koussoroplis ◽  
Michael Danger ◽  
Jean‐Pierre Aguer ◽  
Nicole Morel‐Desrosiers ◽  
...  

2021 ◽  
Author(s):  
Sujay Ray ◽  
Nibedita Pal ◽  
Nils G Walter

Abstract Homologous recombination forms and resolves an entangled DNA Holliday Junction (HJ) crucial for achieving genetic reshuffling and genome repair. To maintain genomic integrity, specialized resolvase enzymes cleave the entangled DNA into two discrete DNA molecules. However, it is unclear how two similar stacking isomers are distinguished, and how a cognate sequence is found and recognized to achieve accurate recombination. We here use single-molecule fluorescence observation and cluster analysis to examine how prototypic bacterial resolvase RuvC singles out two of the four HJ strands and achieves sequence-specific cleavage. We find that RuvC first exploits, then constrains the dynamics of intrinsic HJ isomer exchange at a sampled branch position to direct cleavage toward the catalytically competent HJ conformation and sequence, thus controlling recombination output at minimal energetic cost. Our model of rapid DNA scanning followed by ‘snap-locking’ of a cognate sequence is strikingly consistent with the conformational proofreading of other DNA-modifying enzymes.


Genetics ◽  
2003 ◽  
Vol 165 (4) ◽  
pp. 1641-1649
Author(s):  
Cecilia Dahlberg ◽  
Lin Chao

Abstract Although plasmids can provide beneficial functions to their host bacteria, they might confer a physiological or energetic cost. This study examines how natural selection may reduce the cost of carrying conjugative plasmids with drug-resistance markers in the absence of antibiotic selection. We studied two plasmids, R1 and RP4, both of which carry multiple drug resistance genes and were shown to impose an initial fitness cost on Escherichia coli. To determine if and how the cost could be reduced, we subjected plasmid-containing bacteria to 1100 generations of evolution in batch cultures. Analysis of the evolved populations revealed that plasmid loss never occurred, but that the cost was reduced through genetic changes in both the plasmids and the bacteria. Changes in the plasmids were inferred by the demonstration that evolved plasmids no longer imposed a cost on their hosts when transferred to a plasmid-free clone of the ancestral E. coli. Changes in the bacteria were shown by the lowered cost when the ancestral plasmids were introduced into evolved bacteria that had been cured of their (evolved) plasmids. Additionally, changes in the bacteria were inferred because conjugative transfer rates of evolved R1 plasmids were lower in the evolved host than in the ancestral host. Our results suggest that once a conjugative bacterial plasmid has invaded a bacterial population it will remain even if the original selection is discontinued.


2000 ◽  
Vol 2 ◽  
pp. 120-121
Author(s):  
P. Kolh ◽  
V. D'Orio ◽  
B. Lambermont ◽  
P. Gerard ◽  
C. Gommes ◽  
...  

2011 ◽  
Vol 279 (1729) ◽  
pp. 640-644 ◽  
Author(s):  
Graham N. Askew ◽  
Federico Formenti ◽  
Alberto E. Minetti

In Medieval Europe, soldiers wore steel plate armour for protection during warfare. Armour design reflected a trade-off between protection and mobility it offered the wearer. By the fifteenth century, a typical suit of field armour weighed between 30 and 50 kg and was distributed over the entire body. How much wearing armour affected Medieval soldiers' locomotor energetics and biomechanics is unknown. We investigated the mechanics and the energetic cost of locomotion in armour, and determined the effects on physical performance. We found that the net cost of locomotion ( C met ) during armoured walking and running is much more energetically expensive than unloaded locomotion. C met for locomotion in armour was 2.1–2.3 times higher for walking, and 1.9 times higher for running when compared with C met for unloaded locomotion at the same speed. An important component of the increased energy use results from the extra force that must be generated to support the additional mass. However, the energetic cost of locomotion in armour was also much higher than equivalent trunk loading. This additional cost is mostly explained by the increased energy required to swing the limbs and impaired breathing. Our findings can predict age-associated decline in Medieval soldiers' physical performance, and have potential implications in understanding the outcomes of past European military battles.


2016 ◽  
Vol 94 (12) ◽  
pp. 829-836 ◽  
Author(s):  
B.J. Klüg-Baerwald ◽  
L.E. Gower ◽  
C.L. Lausen ◽  
R.M. Brigham

Winter activity of bats is common, yet poorly understood. Other studies suggest a relationship between winter activity and ambient temperature, particularly temperature at sunset. We recorded echolocation calls to determine correlates of hourly bat activity in Dinosaur Provincial Park, Alberta, Canada. We documented bat activity in temperatures as low as −10.4 °C. We observed big brown bats (Eptesicus fuscus (Palisot de Beauvois, 1796)) flying at colder temperatures than species of Myotis bats (genus Myotis Kaup, 1829). We show that temperature and wind are important predictors of winter activity by E. fuscus and Myotis, and that Myotis may also use changes in barometric pressure to cue activity. In the absence of foraging opportunity, we suggest these environmental factors relate to heat loss and thus the energetic cost of flight. To understand the energetic consequences of bat flight in cold temperatures, we estimated energy expenditure during winter flights of E. fuscus and little brown myotis (Myotis lucifugus (Le Conte, 1831)) using species-specific parameters. We estimated that winter flight uses considerable fat stores and that flight thermogenesis could mitigate energetic costs by 20% or more. We also show that temperature-dependent interspecific differences in winter activity likely stem from differences between species in heat loss and potential for activity–thermoregulatory heat substitution.


1982 ◽  
Vol 60 (2) ◽  
pp. 114-119 ◽  
Author(s):  
G. W. Mainwood ◽  
M. Alward ◽  
B. Eiselt

Rats were fed on a diet containing 1% β-guanidinopropionate (Gp) to deplete their muscles of creatine. The apparent energy reserves (creatine phosphate (CrP) + ATP) of rested state diaphragm muscle strips were found to be 79% depleted by this treatment. To determine if the effective energy reserves for contraction were depleted to a similar extent, the response to direct electrical stimulation (0.2-s tetani) was measured in the presence of inhibitors of respiration (NaCN) and glycolysis (iodoacetate). Only 4 ± 1 contractions could be elicited from strips from Gp-fed animals. Normal strips gave 15 ± 2 contractions under the same conditions. For both sets of diaphragms the energetic cost of contraction in terms of ~P was approximately 1 μmol/g wet weight. The mean level of Pi generated following stimulation to exhaustion was 10.1 μmol/g more in normal than in depleted strips. It is concluded that no significant additional energy stores such as phosphorylated Gp are readily available for contraction in muscles depleted of creatine by Gp treatment.


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