CYP2D6 allele frequencies in Korean population, comparison with East Asian, Caucasian and African populations, and the comparison of metabolic activity of CYP2D6 genotypes

2018 ◽  
Vol 41 (9) ◽  
pp. 921-930 ◽  
Author(s):  
Ji-Young Byeon ◽  
Young-Hoon Kim ◽  
Choong-Min Lee ◽  
Se-Hyung Kim ◽  
Won-Ki Chae ◽  
...  
2020 ◽  
Vol 40 (2) ◽  
pp. 142-152 ◽  
Author(s):  
Ya‐Feng Wen ◽  
Kathleen A. Culhane‐Pera ◽  
Bharat Thyagarajan ◽  
Jeffrey R. Bishop ◽  
Heather Zierhut ◽  
...  

2002 ◽  
Vol 48 (7) ◽  
pp. 983-988 ◽  
Author(s):  
Ling Ji ◽  
Shixiu Pan ◽  
Jacqueline Marti-Jaun ◽  
Edgar Hänseler ◽  
Katharina Rentsch ◽  
...  

Abstract Background: Cytochrome P450-dependent monooxygenase 2D6 (CYP2D6) activity can be estimated by investigating the metabolism of model drugs or by genotyping the most common CYP2D6 alleles. For Caucasians, the CYP2D6 allele frequencies are well investigated, and single-step assays are available for genotyping, whereas allele analysis in mainland Chinese is limited. Methods: Two tetra-primer assays and one allele-specific amplification assay were developed to easily genotype the CYP2D6 alleles *8, *10, and *14 previously detected in Asians. Applying these assays in combination with established single-tube assays, we analyzed 223 DNA samples from Chinese volunteers for the CYP2D6 alleles *3, *4, *5, *6, *8, *10, and *14 and for duplication of CYP2D6. Results: Six different alleles were detected in mainland Chinese. The most frequent mutant allele was the intermediate metabolizer allele, CYP2D6*10, with a prevalence of 51.3%, followed by the poor metabolizer alleles CYP2D6*5 (7.2%) and a novel variant of CYP2D6*14. This novel *14B allele (2.0%) differs from the *14 allele by the absence of the C188T substitution and by the additional G1749C substitution. Furthermore, six duplication alleles of CYP2D6 were detected, including one duplication of the *10 allele (*10X2). Conclusions: The CYP2D6 allele frequencies in mainland Chinese shows some genetic diversity compared with Chinese from other regions: a novel *14B allele, a slightly higher frequency of the *5 allele, and a slightly lower frequency of the *10 allele than in most other Chinese populations.


Author(s):  
Fahd Al-Mulla ◽  
Anwar Mohammad ◽  
Ashraf Al Madhoun ◽  
Dania Haddad ◽  
Hamad Ali ◽  
...  

AbstractThe severity of the new COVID-19 pandemic caused by the SARS-CoV-2 virus is strikingly variable in different global populations. SARS-CoV-2 uses ACE2 as a cell receptor, TMPRSS2 protease, and FURIN peptidase to invade human cells. Here, we investigated 1,378 whole-exome sequences of individuals from the Middle Eastern populations (Kuwait, Qatar, and Iran) to explore natural variations in the ACE2, TMPRSS2, and FURIN genes. We identified two activating variants (K26R and N720D) in the ACE2 gene that are more common in Europeans than in the Middle Eastern, East Asian, and African populations. We postulate that K26R can activate ACE2 and facilitate binding to S-protein RBD while N720D enhances TMPRSS2 cutting and, ultimately, viral entry. We also detected deleterious variants in FURIN that are frequent in the Middle Eastern but not in the European populations. This study highlights specific genetic variations in the ACE2 and FURIN genes that may explain SARS-CoV-2 clinical disparity. We showed structural evidence of the functionality of these activating variants that increase the SARS-CoV-2 aggressiveness. Finally, our data illustrate a significant correlation between ACE2 variants identified in people from Middle Eastern origins that can be further explored to explain the variation in COVID-19 infection and mortality rates globally.


2003 ◽  
Vol 136 (1-3) ◽  
pp. 92-95 ◽  
Author(s):  
Yoo-Li Kim ◽  
Ji-Yeon Hwang ◽  
Yoo-Jin Kim ◽  
Seok Lee ◽  
Nak-Gyun Chung ◽  
...  

2014 ◽  
Vol 49 (suppl 1) ◽  
pp. i28-i28
Author(s):  
I. G. Choi ◽  
B. L. Park ◽  
J. S. Bae ◽  
J. W. Kim ◽  
B. C. Lee ◽  
...  

2012 ◽  
Vol 12 (1) ◽  
Author(s):  
Hyun Kyung Park ◽  
Sook-Hyang Jeong ◽  
Jin-Wook Kim ◽  
Byung-Hyun Woo ◽  
Dong Ho Lee ◽  
...  

2004 ◽  
Vol 32 (12) ◽  
pp. 1341-1344 ◽  
Author(s):  
Joo-Youn Cho ◽  
Hyeong-Seok Lim ◽  
Jae-Yong Chung ◽  
Kyung-Sang Yu ◽  
Jung-Ryul Kim ◽  
...  

2020 ◽  
Vol 48 (19) ◽  
pp. 11030-11039
Author(s):  
Matthew W Hodgman ◽  
Justin B Miller ◽  
Taylor E Meurs ◽  
John S K Kauwe

Abstract Synonymous codon usage significantly impacts translational and transcriptional efficiency, gene expression, the secondary structure of both mRNA and proteins, and has been implicated in various diseases. However, population-specific differences in codon usage biases remain largely unexplored. Here, we present a web server, https://cubap.byu.edu, to facilitate analyses of codon usage biases across populations (CUBAP). Using the 1000 Genomes Project, we calculated and visually depict population-specific differences in codon frequencies, codon aversion, identical codon pairing, co-tRNA codon pairing, ramp sequences, and nucleotide composition in 17,634 genes. We found that codon pairing significantly differs between populations in 35.8% of genes, allowing us to successfully predict the place of origin for African and East Asian individuals with 98.8% and 100% accuracy, respectively. We also used CUBAP to identify a significant bias toward decreased CTG pairing in the immunity related GTPase M (IRGM) gene in East Asian and African populations, which may contribute to the decreased association of rs10065172 with Crohn's disease in those populations. CUBAP facilitates in-depth gene-specific and codon-specific visualization that will aid in analyzing candidate genes identified in genome-wide association studies, identifying functional implications of synonymous variants, predicting population-specific impacts of synonymous variants and categorizing genetic biases unique to certain populations.


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