scholarly journals Genome wide identification, characterization and validation of novel miRNA-based SSR markers in pomegranate (Punica granatum L.)

2020 ◽  
Vol 26 (4) ◽  
pp. 683-696 ◽  
Author(s):  
Prakash G. Patil ◽  
N. V. Singh ◽  
Shilpa Parashuram ◽  
Abhishek Bohra ◽  
Dhanajay M. Mundewadikar ◽  
...  
Keyword(s):  
Ssr Markers ◽  
Punica Granatum ◽  
Novel Mirna ◽  
Genome Wide ◽  
Punica Granatum L

scholarly journals Development and characterization of SSR markers for pomegranate (Punica granatum L.) using an enriched library

2010 ◽  
Vol 2 (S1) ◽  
pp. 283-285 ◽  
Author(s):  
N. Hasnaoui ◽  
A. Buonamici ◽  
F. Sebastiani ◽  
M. Mars ◽  
M. Trifi ◽  
...  
Keyword(s):  
Ssr Markers ◽  
Punica Granatum ◽  
Enriched Library ◽  
Punica Granatum L

Genome-wide characterization and development of simple sequence repeat markers for genetic studies in pomegranate (Punica granatum L.)

Trees ◽  
2020 ◽  
Vol 34 (4) ◽  
pp. 987-998 ◽  
Author(s):  
Prakash G. Patil ◽  
N. V. Singh ◽  
Shilpa Parashuram ◽  
Abhishek Bohra ◽  
Roopa Sowjanya ◽  
...  
Keyword(s):  
Simple Sequence Repeat ◽  
Punica Granatum ◽  
Sequence Repeat ◽  
Genetic Studies ◽  
Simple Sequence Repeat Markers ◽  
Genome Wide ◽  
Punica Granatum L ◽  
Simple Sequence

scholarly journals Assessment of genetic diversity and population structure in pomegranate (Punica granatum L.) using hypervariable SSR markers

2020 ◽  
Vol 26 (6) ◽  
pp. 1249-1261
Author(s):  
Prakash G. Patil ◽  
Shivani M. Jamma ◽  
N. V. Singh ◽  
Abhishek Bohra ◽  
Shilpa Parashuram ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Population Structure ◽  
Ssr Markers ◽  
Punica Granatum ◽  
Punica Granatum L

scholarly journals Genome-wide Identification and Expression Analysis of TALE Gene Family in Pomegranate (Punica granatum L.)

Agronomy ◽  
2020 ◽  
Vol 10 (6) ◽  
pp. 829
Author(s):  
Yuying Wang ◽  
Yujie Zhao ◽  
Ming Yan ◽  
Honglian Zhao ◽  
Xinhui Zhang ◽  
...  
Keyword(s):  
Gene Family ◽  
Theoretical Basis ◽  
Expression Patterns ◽  
Promoter Sequence ◽  
Punica Granatum ◽  
Tissue Expression ◽  
Flower Meristem ◽  
Genome Wide ◽  
Flower Organs ◽  
Punica Granatum L

The three-amino-acid-loop-extension (TALE) gene family is a pivotal transcription factor that regulates the development of flower organs, flower meristem formation, organ morphogenesis and fruit development. A total of 17 genes of pomegranate TALE family were identified and analyzed in pomegranate via bioinformatics methods, which provided a theoretical basis for the functional research and utilization of pomegranate TALE family genes. The results showed that the PgTALE family genes were divided into eight subfamilies (KNOX-Ⅰ, KNOX-Ⅱ, KNOX-Ⅲ, BELL-Ⅰ, BELL-Ⅱ, BELL-Ⅲ, BELL-Ⅳ, and BELL-Ⅴ). All PgTALEs had a KNOX domain or a BELL domain, and their structures were conservative. The 1500 bp promoter sequence had multiple cis-elements in response to hormones (auxin, gibberellin) and abiotic stress, indicating that most of PgTALE were involved in the growth and development of pomegranates and stress. Function prediction and protein-protein network analysis showed that PgTALE may participate in regulating the development of apical meristems, flowers, carpels, and ovules. Analysis of gene expression patterns showed that the pomegranate TALE gene family had a particular tissue expression specificity. In conclusion, the knowledge of the TALE gene gained in pomegranate may be applied to other fruit as well.

scholarly journals Genome-wide identification of microRNAs in pomegranate (Punica granatum L.) by high-throughput sequencing

2016 ◽  
Vol 16 (1) ◽  
Author(s):  
Thangasamy Saminathan ◽  
Abiodun Bodunrin ◽  
Nripendra V. Singh ◽  
Ramajayam Devarajan ◽  
Padma Nimmakayala ◽  
...  
Keyword(s):  
High Throughput ◽  
High Throughput Sequencing ◽  
Punica Granatum ◽  
Genome Wide ◽  
Punica Granatum L

Genome-wide identification and expression of YABBY genes family during flower development in Punica granatum L.

Gene ◽  
2020 ◽  
Vol 752 ◽  
pp. 144784
Author(s):  
Yujie Zhao ◽  
Cuiyu Liu ◽  
Dapeng Ge ◽  
Ming Yan ◽  
Yuan Ren ◽  
...  
Keyword(s):  
Flower Development ◽  
Punica Granatum ◽  
Genome Wide ◽  
Punica Granatum L

scholarly journals Assessment of Genetic Variation within Commercial Iranian Pomegranate (Punica granatum L.) Cultivars, Using ISSR and SSR Markers

2017 ◽  
Vol 5 (6) ◽  
pp. 622
Author(s):  
Meysam Madadi ◽  
Zabihollah Zamani ◽  
Reza Fatahi
Keyword(s):  
Genetic Variation ◽  
Ssr Markers ◽  
Polymorphic Information Content ◽  
Punica Granatum ◽  
Issr Markers ◽  
Resolving Power ◽  
Horticultural Crops ◽  
Commercial Cultivars ◽  
Ssr Loci ◽  
Punica Granatum L

Pomegranate is one of the most important horticultural crops in Iran, and has been cultivated for thousands of years in this country. At this period due to selection of superior cultivars from nature or mutation emerged in these cultivars, and their vegetative propagation, substantial genetic variation has occurred within and among the cultivars. Thus, each cultivar may consist of different clones. According to this issue, diversity within four commercial cultivars of pomegranate was analyzed. Two molecular marker systems including ISSR and SSR were used to evaluate variability between 36 samples of four commercial cultivars. ISSR markers produced 114 amplification products, out of which 97 were polymorphic (83.23%). Mean resolving power was 2.96 for ISSR markers. 19 SSR molecular markers were used, 15 of which amplified polymorphic products, while the remaining ones monomorphic., The number of polymorphic alleles per locus ranged from two to four (average 3.6). The observed and expected heterozygosities ranged from 0.04 to 0.92 and 0.14 to 0.62, respectively. In addition, mean polymorphic information content was 0.45 for SSR loci. Our results showed that commercial Iranian pomegranate have different clones. Therefore, ISSR and SSR markers can be a useful tools for detecting clones of each cultivar.

Analysis of genetic structure in a large sample of pomegranate (Punica granatum L.) using fluorescent SSR markers

2018 ◽  
Vol 93 (6) ◽  
pp. 659-665 ◽  
Author(s):  
Xiang Luo ◽  
Shangyin Cao ◽  
Zhaoxiang Hao ◽  
Lefeng Hou ◽  
Da Cao ◽  
...  
Keyword(s):  
Genetic Structure ◽  
Ssr Markers ◽  
Punica Granatum ◽  
Large Sample ◽  
Punica Granatum L
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