scholarly journals Genetic diversity of giant clams (Tridacna spp.) and their associated Symbiodinium in the central Red Sea

2017 ◽  
Vol 47 (4) ◽  
pp. 1209-1222 ◽  
Author(s):  
Melissa K. Pappas ◽  
Song He ◽  
Royale S. Hardenstine ◽  
Hana Kanee ◽  
Michael L. Berumen
2021 ◽  
Vol 8 ◽  
Author(s):  
Kah Kheng Lim ◽  
Susann Rossbach ◽  
Nathan R. Geraldi ◽  
Ester A. Serrão ◽  
Carlos M. Duarte

Giant clams are an important ecological component of coral reefs in the Red Sea, as they enhance the reef’s productivity and provide habitat that can increase diversity. Three species of giant clams, namely Tridacna maxima, T. squamosa, and T. squamosina have been described within the Red Sea. However, due to its scarcity, information about the distribution and ecology of T. squamosina in the Saudi Arabian Red Sea is still lacking. This study used DNA barcoding to confirm the identity of the rare T. squamosina in the Farasan Banks. Six mtCOI fragments (500 bp) of T. squamosina were successfully amplified using the SQUA-primers for the first time. We used our data along with 18 reference sequences (16S) from the online database to assess the genetic diversity and population structure of T. squamosina. Low genetic diversity among the T. squamosina populations inferred from the 16S sequences implies a recent bottleneck for this species, which is supported by their historically higher diversity based on the coalescent-based estimator. Given the small population abundance and limited genetic variation of T. squamosina, it may warrant immediate local protections such as biobanking and fertility preservation programs as well as effective integrated coastal zone management plans.


2017 ◽  
Vol 47 (4) ◽  
pp. 1223-1226 ◽  
Author(s):  
Melissa K. Pappas ◽  
Song He ◽  
Royale S. Hardenstine ◽  
Hana Kanee ◽  
Michael L. Berumen

2021 ◽  
Author(s):  
Taha Soliman ◽  
Joseph D DiBattista ◽  
Reda M Fahim ◽  
James D Reimer

We examined genetic diversity and connectivity of two indigenous Mediterranean goatfish species (Mullus barbatus and M. surmuletus), and a Lessepsian migrant species (Upeneus moluccensis), across the Nile Delta outflow using two mitochondrial DNA markers (COI and cyt b). Genetic diversity was high for the two Mediterranean species but relatively lower for the migrant species, suggesting founder effects after invasion from the Red Sea. Confirmation of this hypothesis, however, would require comparison with populations of origin in the Red Sea and the Indo-West Pacific. AMOVA and network analyses revealed no genetic partitioning for all species, indicating the Nile outflow does not currently, and may not have historically, posed a significant barrier to larval dispersal in these goatfish despite a present-day temperature and salinity gradient along the Mediterranean coastline of Egypt.


Coral Reefs ◽  
2020 ◽  
Vol 39 (5) ◽  
pp. 1345-1360
Author(s):  
Susann Rossbach ◽  
Sebastian Overmans ◽  
Altynay Kaidarova ◽  
Jürgen Kosel ◽  
Susana Agustí ◽  
...  

Aquaculture ◽  
2021 ◽  
pp. 737571
Author(s):  
T.G. Sumithra ◽  
S.R. Krupesha Sharma ◽  
L. Neelima ◽  
N.R. Dhanutha ◽  
Aswathy Joshy ◽  
...  

2008 ◽  
Vol 155 (2) ◽  
pp. 211-221 ◽  
Author(s):  
Carin Jantzen ◽  
Christian Wild ◽  
Mohammed El-Zibdah ◽  
Hilly Ann Roa-Quiaoit ◽  
Christoph Haacke ◽  
...  

2017 ◽  
Vol 47 (4) ◽  
pp. 1065-1078 ◽  
Author(s):  
Tullia I. Terraneo ◽  
Roberto Arrigoni ◽  
Francesca Benzoni ◽  
Matthew D. Tietbohl ◽  
Michael L. Berumen

F1000Research ◽  
2017 ◽  
Vol 6 ◽  
pp. 1790 ◽  
Author(s):  
Shaza O. Mustafa ◽  
Muzamil M. Abdel Hamid ◽  
Mariam A. Aboud ◽  
Mutaz Amin ◽  
Mohamed S. Muneer ◽  
...  

Background: Malaria  is a major health problem, with over one third of worldwide populations currently at risk.  Determining the genetic diversity of plasmodium parasites is essential for assessing the efficacy of antimalarial drugs and for future vaccine development. This study investigated the genetic diversity of P. falciparum merozoite surface protein 2 (MSP2), and multiplicity of infection (MOI) in different geographic regions in Sudan. Methods: A total of 271 patients with uncomplicated malaria were recruited from four ecological sites during malaria transmission season, 2011-2013. P. falciparum was confirmed using species specific primers targeting the rDNA gene. All P. falciparum positive samples were genotyped for the major MSP2 allelic families (IC1/3D7 and FC27 MSP2 allele) using nested PCR. Multiplicity of infection and allele frequencies were determined. Results: A total of 241 samples (88.9%) were confirmed positive for P. falciparum. The number of different MSP2 alleles were 14, 15, 13 and 12 in Khartoum, Gezira, River Nile and Red Sea states, respectively. The 3D7 allelic family was more prevalent in the states of Khartoum, Gezira, River Nile and Red Sea compared to the FC27 allelic family. Multiclonal infections were observed in 25.8% of patients, with a mean multiplicity of infection (MOI) of 1.45. MOIs were highest in the age group over 40, with an average of 2 and 1.68 in Khartoum and Gezira states, respectively, however MOIs in River Nile and Red Sea states were higher in age groups below 18, with an average of 1.37 and 1.33, respectively. Conclusions: MSP2 allelic genotyping revealed MOI and diversity of the Sudanese P. falciparum isolates. The results of our study are expected to influence current and future malaria control strategies, since the MOI predicts development of clinical malaria and subsequent efficacy of antimalarial treatment.


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