Genome-wide identification and expression analysis of the StSWEET family genes in potato (Solanum tuberosum L.)

2019 ◽  
Vol 42 (2) ◽  
pp. 135-153 ◽  
Author(s):  
Ming Li ◽  
Haijuan Xie ◽  
Miaomiao He ◽  
Wang Su ◽  
Yongzhi Yang ◽  
...  
Keyword(s):  
Solanum Tuberosum ◽  
Expression Analysis ◽  
Solanum Tuberosum L ◽  
Genome Wide

Genome-wide identification and expression analysis of sulfate transporter (SULTR) genes in potato (Solanum tuberosum L.)

Planta ◽  
2016 ◽  
Vol 244 (6) ◽  
pp. 1167-1183 ◽  
Author(s):  
Recep Vatansever ◽  
Ibrahim Koc ◽  
Ibrahim Ilker Ozyigit ◽  
Ugur Sen ◽  
Mehmet Emin Uras ◽  
...  
Keyword(s):  
Solanum Tuberosum ◽  
Expression Analysis ◽  
Solanum Tuberosum L ◽  
Sulfate Transporter ◽  
Genome Wide

Genome-wide identification and expression analysis of StTCP transcription factors of potato (Solanum tuberosum L.)

2019 ◽  
Vol 78 ◽  
pp. 53-63 ◽  
Author(s):  
Yapeng Wang ◽  
Ning Zhang ◽  
Ting Li ◽  
Jiangwei Yang ◽  
Xi Zhu ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Solanum Tuberosum ◽  
Expression Analysis ◽  
Solanum Tuberosum L ◽  
Genome Wide

scholarly journals Genome-wide identification and expression analysis of StPP2C gene family in response to multiple stresses in potato (Solanum tuberosum L.)

2020 ◽  
Vol 19 (6) ◽  
pp. 1609-1624
Author(s):  
Yi-fan WANG ◽  
Yu-qiu LIAO ◽  
Ya-peng WANG ◽  
Jiang-wei YANG ◽  
Ning ZHANG ◽  
...  
Keyword(s):  
Solanum Tuberosum ◽  
Gene Family ◽  
Expression Analysis ◽  
Solanum Tuberosum L ◽  
Multiple Stresses ◽  
Genome Wide

scholarly journals Genome-Wide Association Mapping of Late Blight Tolerance Trait in Potato (Solanum tuberosum L.)

2021 ◽  
Vol 12 ◽  
Author(s):  
Fang Wang ◽  
Meiling Zou ◽  
Long Zhao ◽  
Zhiqiang Xia ◽  
Jian Wang
Keyword(s):  
Solanum Tuberosum ◽  
Late Blight ◽  
Potato Breeding ◽  
Genome Wide Association Study ◽  
Solanum Tuberosum L ◽  
Potato Cultivars ◽  
Genome Wide Association ◽  
Genome Wide ◽  
Population Structure Analysis ◽  
A Genome

Uncovering the genetic basis and optimizing the late blight tolerance trait in potatoes (Solanum tuberosum L.) are crucial for potato breeding. Late blight disease is one of the most significant diseases hindering potato production. The traits of late blight tolerance were evaluated for 284 potato cultivars to identify loci significantly associated with the late blight tolerance trait. Of all, 37 and 15 were the most tolerant to disease, and 107 and 30 were the most susceptible. A total of 22,489 high-quality single-nucleotide polymorphisms and indels were identified in 284 potato cultivars. All the potato cultivars were clustered into eight subgroups using population structure analysis and principal component analysis, which were consistent with the results of the phylogenetic tree analysis. The average genetic diversity for all 284 potato cultivars was 0.216, and the differentiation index of each subgroup was 0.025–0.149. Genome-wide linkage disequilibrium (LD) analysis demonstrated that the average LD was about 0.9 kb. A genome-wide association study using a mixed linear model identified 964 loci significantly associated with the late blight tolerance trait. Fourteen candidate genes for late blight tolerance traits were identified, including genes encoding late blight tolerance protein, chitinase 1, cytosolic nucleotide-binding site–leucine-rich repeat tolerance protein, protein kinase, ethylene-responsive transcription factor, and other potential plant tolerance-related proteins. This study provides novel insights into the genetic architecture of late blight tolerance traits and will be helpful for late blight tolerance in potato breeding.

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