AbstractHere, we present a conceptual and quantitative model to describe the role of the Cytochrome $$\hbox {b}_{6}\hbox {f}$$
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complex in controlling steady-state electron transport in $$\hbox {C}_{3}$$
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leaves. The model is based on new experimental methods to diagnose the maximum activity of Cyt $$\hbox {b}_{6}\hbox {f}$$
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in vivo, and to identify conditions under which photosynthetic control of Cyt $$\hbox {b}_{6}\hbox {f}$$
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is active or relaxed. With these approaches, we demonstrate that Cyt $$\hbox {b}_{6}\hbox {f}$$
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controls the trade-off between the speed and efficiency of electron transport under limiting light, and functions as a metabolic switch that transfers control to carbon metabolism under saturating light. We also present evidence that the onset of photosynthetic control of Cyt $$\hbox {b}_{6}\hbox {f}$$
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occurs within milliseconds of exposure to saturating light, much more quickly than the induction of non-photochemical quenching. We propose that photosynthetic control is the primary means of photoprotection and functions to manage excitation pressure, whereas non-photochemical quenching functions to manage excitation balance. We use these findings to extend the Farquhar et al. (Planta 149:78–90, 1980) model of $$\hbox {C}_{3}$$
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photosynthesis to include a mechanistic description of the electron transport system. This framework relates the light captured by PS I and PS II to the energy and mass fluxes linking the photoacts with Cyt $$\hbox {b}_{6}\hbox {f}$$
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, the ATP synthase, and Rubisco. It enables quantitative interpretation of pulse-amplitude modulated fluorometry and gas-exchange measurements, providing a new basis for analyzing how the electron transport system coordinates the supply of Fd, NADPH, and ATP with the dynamic demands of carbon metabolism, how efficient use of light is achieved under limiting light, and how photoprotection is achieved under saturating light. The model is designed to support forward as well as inverse applications. It can either be used in a stand-alone mode at the leaf-level or coupled to other models that resolve finer-scale or coarser-scale phenomena.
A proposed link between nitrogen and carbon metabolism involving protein phosphorylation in bacteria
