Sequence organization of replication origin of the Escherichia coli K-12 chromosome

1984 ◽  
Vol 176 (4) ◽  
pp. 443-458 ◽  
Author(s):  
Atsuhiro Oka ◽  
Hitoshi Sasaki ◽  
Kazunori Sugimoto ◽  
Mituru Takanami
1985 ◽  
Vol 184 (3) ◽  
pp. 529-533 ◽  
Author(s):  
Minami Matsui ◽  
Atsuhiro Oka ◽  
Mituru Takanami ◽  
Seiichi Yasuda ◽  
Yukinori Hirota

1974 ◽  
Vol 120 (1) ◽  
pp. 1-5 ◽  
Author(s):  
Jacqueline Louarn ◽  
Martha Funderburgh ◽  
Robert E. Bird

Genetics ◽  
1997 ◽  
Vol 145 (3) ◽  
pp. 551-562 ◽  
Author(s):  
Sophie Bachellier ◽  
Jean-Marie Clément ◽  
Maurice Hofnung ◽  
Eric Gilson

A significant fraction of Escherichia coli intergenic DNA sequences is composed of two families of repeated bacterial interspersed mosaic elements (BIME-1 and BIME-2). In this study, we determined the sequence organization of six intergenic regions in 51 E. coli and Shigella natural isolates. Each region contains a BIME in E. coli K-12. We found that multiple sequence variations are located within or near these BIMEs in the different bacteria. Events included excisions of a whole BIME-1, expansion/deletion within a BIME-2 and insertions of non-BIME sequences like the boxC repeat or a new IS element, named IS 1397. Remarkably, 14 out of 14 IS 1397 integration sites correspond to a BIME sequence, strongly suggesting that this IS element is specifically associated with BIMEs, and thus inserts only in extragenic regions. Unlike BIMEs, IS 1397 is not detected in all E. coli isolates. Possible relationships between the presence of this IS element and the evolution of BIMEs are discussed.


1990 ◽  
Vol 172 (9) ◽  
pp. 4888-4900 ◽  
Author(s):  
D Dila ◽  
E Sutherland ◽  
L Moran ◽  
B Slatko ◽  
E A Raleigh

1979 ◽  
Vol 76 (2) ◽  
pp. 575-579 ◽  
Author(s):  
K. Sugimoto ◽  
A. Oka ◽  
H. Sugisaki ◽  
M. Takanami ◽  
A. Nishimura ◽  
...  

Genetics ◽  
1988 ◽  
Vol 119 (4) ◽  
pp. 771-778
Author(s):  
C W Hill ◽  
J A Gray

Abstract In an effort to learn what factors might mitigate the establishment of Escherichia coli variants bearing major chromosomal rearrangements, we have examined the effects on cell growth of two inversions between rRNA operons. One of these inversions, IN(rrnD-rrnE), had been propagated in a commonly used subline of E. coli K-12 for approximately 30 yr before its discovery, a fact that illustrates the absence of obvious detrimental effects associated with the inversion. We found that culturing under conditions requiring repeated transition from stationary phase to rapid growth led to the replacement of IN(rrnD-rrnE) cells by cells that had undergone either of two types of additional chromosomal inversion: one type fully restored the wild-type order, while the other partially restored it. The partial reinversion was also between rrn operons, but it left a small transposition. The tendency for overgrowth by these revertants persisted through several rounds of periodic selection. In contrast, the other inversion, IN(rrnG-rrnE), was associated with severe, detrimental effects. The effects of IN(rrnG-rrnE) were also alleviated by full or partial reinversion. The probable relationship between the severity of the effects caused by the inversions and the degree of displacement of the replication origin is discussed. Spontaneous inversion events between rrn operons separated by 18% of the chromosome were estimated to occur at a frequency of roughly 10(-5). If extended to natural situations, the growth disadvantage together with the relatively high frequency of reinversion suggest that clones of cells with an inversion between these rrn operons would be readily overgrown by revertants.


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