Metabolomics tools for biomarker discovery: applications in chronic kidney disease

2022 ◽  
pp. 153-181
Author(s):  
Paula Cuevas-Delgado ◽  
Verónica Miguel ◽  
Santiago Lamas ◽  
Coral Barbas
2020 ◽  
Vol 15 ◽  
pp. 117727192097614
Author(s):  
Ibrahim Ali ◽  
Sara T Ibrahim ◽  
Rajkumar Chinnadurai ◽  
Darren Green ◽  
Maarten Taal ◽  
...  

Biomarker discovery in the field of risk prediction in chronic kidney disease (CKD) embraces the prospect of improving our ability to risk stratify future adverse outcomes and thereby guide patient care in a new era of personalised medicine. However, many studies that report biomarkers predictive of CKD progression share a key methodological limitation: failure to characterise patients’ renal progression precisely. This weakens any observable association between a biomarker and an outcome poorly defined by a patient’s change in renal function over time. In this commentary, we discuss the need for a better approach in this research arena and describe a compelling strategy that has the advantage of offering robust and meaningful biomarker exploration relevant to CKD progression.


The Analyst ◽  
2018 ◽  
Vol 143 (18) ◽  
pp. 4448-4458 ◽  
Author(s):  
S. Benito ◽  
A. Sánchez-Ortega ◽  
N. Unceta ◽  
F. Andrade ◽  
L. Aldámiz-Echevarria ◽  
...  

Pediatric chronic kidney disease (CKD) is a clinical syndrome characterized by renal hypofunction occurring due to gradual and irreversible kidney damage that can further progress over time.


Biomedicines ◽  
2020 ◽  
Vol 8 (12) ◽  
pp. 606
Author(s):  
Evan Owens ◽  
Ken-Soon Tan ◽  
Robert Ellis ◽  
Sharon Del Vecchio ◽  
Tyrone Humphries ◽  
...  

Chronic kidney disease (CKD) patients typically progress to kidney failure, but the rate of progression differs per patient or may not occur at all. Current CKD screening methods are sub-optimal at predicting progressive kidney function decline. This investigation develops a model for predicting progressive CKD based on a panel of biomarkers representing the pathophysiological processes of CKD, kidney function, and common CKD comorbidities. Two patient cohorts are utilised: The CKD Queensland Registry (n = 418), termed the Biomarker Discovery cohort; and the CKD Biobank (n = 62), termed the Predictive Model cohort. Progression status is assigned with a composite outcome of a ≥30% decline in eGFR from baseline, initiation of dialysis, or kidney transplantation. Baseline biomarker measurements are compared between progressive and non-progressive patients via logistic regression. In the Biomarker Discovery cohort, 13 biomarkers differed significantly between progressive and non-progressive patients, while 10 differed in the Predictive Model cohort. From this, a predictive model, based on a biomarker panel of serum creatinine, osteopontin, tryptase, urea, and eGFR, was calculated via linear discriminant analysis. This model has an accuracy of 84.3% when predicting future progressive CKD at baseline, greater than eGFR (66.1%), sCr (67.7%), albuminuria (53.2%), or albumin-creatinine ratio (53.2%).


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