Theoretical Studies of Ion–Molecule Capture and Complex Formation Dynamics in Molecular Collisions

Author(s):  
Nikola Markoviˇ ◽  
Sture Nordholm
2018 ◽  
Vol 86 (6) ◽  
pp. 676-683 ◽  
Author(s):  
Grigor Arakelov ◽  
Vahram Arakelov ◽  
Karen Nazaryan

2021 ◽  
Vol 2021 ◽  
pp. 1-12
Author(s):  
Elliot Springfield ◽  
Alana Willis ◽  
John Merle ◽  
Johanna Mazlo ◽  
Maria Ngu-Schwemlein

Tetrapeptides containing a Cys-Gly-Cys motif and a propensity to adopt a reverse-turn structure were synthesized to evaluate how O-, N-, H-, and aromatic π donor groups might contribute to mercury(II) complex formation. Tetrapeptides Xaa-Cys-Gly-Cys, where Xaa is glycine, glutamate, histidine, or tryptophan, were prepared and reacted with mercury(II) chloride. Their complexation with mercury(II) was studied by spectroscopic methods and computational modeling. UV-vis studies confirmed that mercury(II) binds to the cysteinyl thiolates as indicated by characteristic ligand-to-metal-charge-transfer transitions for bisthiolated S-Hg-S complexes, which correspond to 1 : 1 mercury-peptide complex formation. ESI-MS data also showed dominant 1 : 1 mercury-peptide adducts that are consistent with double deprotonations from the cysteinyl thiols to form thiolates. These complexes exhibited a strong positive circular dichroism band at 210 nm and a negative band at 193 nm, indicating that these peptides adopted a β-turn structure after binding mercury(II). Theoretical studies confirmed that optimized 1 : 1 mercury-peptide complexes adopt β-turns stabilized by intramolecular hydrogen bonds. These optimized structures also illustrate how specific N-terminal side-chain donor groups can assume intramolecular interactions and contribute to complex stability. Fluorescence quenching results provided supporting data that the indole donor group could interact with the coordinated mercury. The results from this study indicate that N-terminal side-chain residues containing carboxylate, imidazole, or indole groups can participate in stabilizing dithiolated mercury(II) complexes. These structural insights on peripheral mercury-peptide interactions provide additional understanding of the chemistry of mercury(II) with side-chain donor groups in peptides.


2010 ◽  
Vol 12 (7) ◽  
pp. 1557 ◽  
Author(s):  
Keita Iida ◽  
Nobuhiko J. Suematsu ◽  
Yumi Miyahara ◽  
Hiroyuki Kitahata ◽  
Masaharu Nagayama ◽  
...  

Water ◽  
2019 ◽  
Vol 11 (4) ◽  
pp. 719 ◽  
Author(s):  
Aline Romero-Natale ◽  
Ilaria Palchetti ◽  
Mayra Avelar ◽  
Enrique González-Vergara ◽  
José Garate-Morales ◽  
...  

A spectrophotometric method for the determination of glyphosate based on the monitoring of a complex formation between bis 5-phenyldipyrrinate of nickel (II) and the herbicide was developed. The method showed a short response time (10 s), high selectivity (very low interference from other pesticides and salts), and high sensitivity (LOD 2.07 × 10−7 mol/L, LOQ 9.87 × 10−7 mol/L, and a Kd from 1.75 × 10−6 to 6.95 × 10−6 mol/L). The Job plot showed that complex formation occurs with a 1:1 stoichiometry. The method was successfully applied in potable, urban, groundwater, and residual-treated water samples, showing high precision (0.34–2.9%) and accuracy (87.20–119.04%). The structure of the complex was elucidated through theoretical studies demonstrating that the nickel in the bis 5-phenyldipyrrinate forms a distorted octahedral molecular geometry by expanding its coordination number through one bond with the nitrogen and another with the oxygen of the glyphosate’ carboxyl group, at distances between 1.89–2.08 Å.


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