scholarly journals Complexity of seemingly simple lipid nanodiscs

2020 ◽  
Vol 1862 (11) ◽  
pp. 183420 ◽  
Author(s):  
Piotr Stepien ◽  
Bozena Augustyn ◽  
Chetan Poojari ◽  
Wojciech Galan ◽  
Agnieszka Polit ◽  
...  
Keyword(s):  
2021 ◽  
Vol 28 (3) ◽  
pp. 258-267 ◽  
Author(s):  
Meng Zhang ◽  
Miao Gui ◽  
Zi-Fu Wang ◽  
Christoph Gorgulla ◽  
James J. Yu ◽  
...  

2018 ◽  
Author(s):  
Doreen Matthies ◽  
Chanhyung Bae ◽  
Gilman ES Toombes ◽  
Tara Fox ◽  
Alberto Bartesaghi ◽  
...  

2021 ◽  
Author(s):  
Toby S Turney ◽  
Vivian Li ◽  
Stephen G Brohawn

TWIK1 is a widely expressed pH-gated two-pore domain K+ channel (K2P) that contributes to cardiac rhythm generation and insulin release from pancreatic beta cells. TWIK1 displays unique properties among K2Ps including low basal activity and inhibition by extracellular protons through incompletely understood mechanisms. Here, we present cryo-EM structures of TWIK1 in lipid nanodiscs at high and low pH that reveal a novel gating mechanism at the K+ selectivity filter. At high pH, TWIK1 adopts an open conformation. At low pH, protonation of an extracellular histidine results in a cascade of conformational changes that close the channel by sealing the top of the selectivity filter, displacing the helical cap to block extracellular ion access pathways, and opening gaps for lipid block of the intracellular cavity. These data provide a mechanistic understanding for extracellular pH-gating of TWIK1 and show how diverse mechanisms have evolved to gate the selectivity filter of K+ channels.


2018 ◽  
Author(s):  
David M. Kern ◽  
SeCheol Oh ◽  
Richard K. Hite ◽  
Stephen G. Brohawn

AbstractHypoosmotic conditions activate volume-regulated anion channels in vertebrate cells. These channels are formed by leucine-rich repeat-containing protein 8 (LRRC8) family members and contain LRRC8A in homo- or hetero-hexameric assemblies. Here we present single-particle cryo-electron microscopy structures of LRRC8A in complex with the inhibitor DCPIB reconstituted in lipid nanodiscs. DCPIB plugs the channel like a cork in a bottle - binding in the extracellular selectivity filter and sterically occluding ion conduction. Constricted and expanded structures reveal coupled dilation of cytoplasmic LRRs and the channel pore, suggesting a mechanism for channel gating by internal stimuli. Conformational and symmetry differences between LRRC8A structures determined in detergent micelles and lipid bilayers related to reorganization of intersubunit lipid binding sites demonstrate a critical role for the membrane in determining channel structure. These results provide insight into LRRC8 gating and inhibition and the role of lipids in the structure of an ionic-strength sensing ion channel.


2020 ◽  
Vol 11 (1) ◽  
Author(s):  
Arvind Kumar ◽  
Sandip Basak ◽  
Shanlin Rao ◽  
Yvonne Gicheru ◽  
Megan L. Mayer ◽  
...  

Biomolecules ◽  
2020 ◽  
Vol 10 (7) ◽  
pp. 1069
Author(s):  
Marc A. Sprague-Piercy ◽  
Jan C. Bierma ◽  
Marquise G. Crosby ◽  
Brooke P. Carpenter ◽  
Gemma R. Takahashi ◽  
...  

The Droserasins, aspartic proteases from the carnivorous plant Drosera capensis, contain a 100-residue plant-specific insert (PSI) that is post-translationally cleaved and independently acts as an antimicrobial peptide. PSIs are of interest not only for their inhibition of microbial growth, but also because they modify the size of lipid vesicles and strongly interact with biological membranes. PSIs may therefore be useful for modulating lipid systems in NMR studies of membrane proteins. Here we present the expression and biophysical characterization of the Droserasin 1 PSI (D1 PSI.) This peptide is monomeric in solution and maintains its primarily α -helical secondary structure over a wide range of temperatures and pH values, even under conditions where its three disulfide bonds are reduced. Vesicle fusion assays indicate that the D1 PSI strongly interacts with bacterial and fungal lipids at pH 5 and lower, consistent with the physiological pH of D. capensis mucilage. It binds lipids with a variety of head groups, highlighting its versatility as a potential stabilizer for lipid nanodiscs. Solid-state NMR spectra collected at a field strength of 36 T, using a unique series-connected hybrid magnet, indicate that the peptide is folded and strongly bound to the membrane. Molecular dynamics simulations indicate that the peptide is stable as either a monomer or a dimer in a lipid bilayer. Both the monomer and the dimer allow the passage of water through the membrane, albeit at different rates.


2019 ◽  
Vol 91 (14) ◽  
pp. 9284-9291 ◽  
Author(s):  
Lawrence R. Walker ◽  
Elaine M. Marzluff ◽  
Julia A. Townsend ◽  
William C. Resager ◽  
Michael T. Marty

2018 ◽  
Vol 130 (5) ◽  
pp. 1356-1359 ◽  
Author(s):  
Thirupathi Ravula ◽  
Nathaniel Z. Hardin ◽  
Sudheer Kumar Ramadugu ◽  
Sarah J. Cox ◽  
Ayyalusamy Ramamoorthy
Keyword(s):  

Langmuir ◽  
2017 ◽  
Vol 33 (40) ◽  
pp. 10655-10662 ◽  
Author(s):  
Thirupathi Ravula ◽  
Nathaniel Z. Hardin ◽  
Sudheer Kumar Ramadugu ◽  
Ayyalusamy Ramamoorthy

2020 ◽  
Vol 56 (69) ◽  
pp. 9998-10001 ◽  
Author(s):  
Thirupathi Ravula ◽  
Bikash R. Sahoo ◽  
Xiaofeng Dai ◽  
Ayyalusamy Ramamoorthy

Measurement of ordering of water molecules in magnetically aligned polymer-nanodiscs using an integrated 17O NMR and MD simulation.


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