scholarly journals Genetic variability affects the skeletal response to immobilization in founder strains of the diversity outbred mouse population

Bone Reports ◽  
2021 ◽  
pp. 101140
Author(s):  
Michael A. Friedman ◽  
Abdullah Abood ◽  
Bhavya Senwar ◽  
Yue Zhang ◽  
Camilla Reina Maroni ◽  
...  
2014 ◽  
Vol 4 (12) ◽  
pp. 2353-2363 ◽  
Author(s):  
Tangi L. Smallwood ◽  
Daniel M. Gatti ◽  
Pamela Quizon ◽  
George M. Weinstock ◽  
Kuo-Chen Jung ◽  
...  

2018 ◽  
Vol 29 (5-6) ◽  
pp. 310-324 ◽  
Author(s):  
Joshua T. Yuan ◽  
Daniel M. Gatti ◽  
Vivek M. Philip ◽  
Steven Kasparek ◽  
Andrew M. Kreuzman ◽  
...  

2014 ◽  
Vol 28 (S1) ◽  
Author(s):  
Brian Bennett ◽  
Tangi Smallwood ◽  
Pamela Quizon ◽  
Daniel Pomp

2013 ◽  
Vol 12 (4) ◽  
pp. 424-437 ◽  
Author(s):  
R. W. Logan ◽  
R. F. Robledo ◽  
J. M. Recla ◽  
V. M. Philip ◽  
J. A. Bubier ◽  
...  

2012 ◽  
Vol 23 (9-10) ◽  
pp. 713-718 ◽  
Author(s):  
Gary A. Churchill ◽  
Daniel M. Gatti ◽  
Steven C. Munger ◽  
Karen L. Svenson

PLoS ONE ◽  
2020 ◽  
Vol 15 (6) ◽  
pp. e0233377
Author(s):  
David C. Katz ◽  
J. David Aponte ◽  
Wei Liu ◽  
Rebecca M. Green ◽  
Jessica M. Mayeux ◽  
...  

2016 ◽  
Vol 6 (12) ◽  
pp. 3893-3902 ◽  
Author(s):  
Elissa J Chesler ◽  
Daniel M Gatti ◽  
Andrew P Morgan ◽  
Marge Strobel ◽  
Laura Trepanier ◽  
...  

Abstract Multi-parent populations (MPPs) capture and maintain the genetic diversity from multiple inbred founder strains to provide a resource for high-resolution genetic mapping through the accumulation of recombination events over many generations. Breeding designs that maintain a large effective population size with randomized assignment of breeders at each generation can minimize the impact of selection, inbreeding, and genetic drift on allele frequencies. Small deviations from expected allele frequencies will have little effect on the power and precision of genetic analysis, but a major distortion could result in reduced power and loss of important functional alleles. We detected strong transmission ratio distortion in the Diversity Outbred (DO) mouse population on chromosome 2, caused by meiotic drive favoring transmission of the WSB/EiJ allele at the R2d2 locus. The distorted region harbors thousands of polymorphisms derived from the seven non-WSB founder strains and many of these would be lost if the sweep was allowed to continue. To ensure the utility of the DO population to study genetic variation on chromosome 2, we performed an artificial selection against WSB/EiJ alleles at the R2d2 locus. Here, we report that we have purged the WSB/EiJ allele from the drive locus while preserving WSB/EiJ alleles in the flanking regions. We observed minimal disruption to allele frequencies across the rest of the autosomal genome. However, there was a shift in haplotype frequencies of the mitochondrial genome and an increase in the rate of an unusual sex chromosome aneuploidy. The DO population has been restored to genome-wide utility for genetic analysis, but our experience underscores that vigilant monitoring of similar genetic resource populations is needed to ensure their long-term utility.


2021 ◽  
Author(s):  
Stéphanie Philtjens ◽  
Dominic J. Acri ◽  
Byungwook Kim ◽  
Hyewon Kim ◽  
Jungsu Kim

Abstract Background: Levels of plasma proteins are under control of environmental and genetic factors. To use plasma proteins in biomarker studies, we need to understand how genetic modifiers influence their abundance. Although there has been expression quantitative trait loci (eQTL) studies on a few limited numbers of proteins, the effect of genetic variants on the levels of multiple plasma proteins still warrants more systematic investigation.Results: To identify genetic modifiers that influence the levels of clinically relevant plasma proteins, we performed protein quantitative trait locus (pQTL) mapping on the 92 proteins present in the Olink Mouse Exploratory Panel using the Diversity Outbred (DO) mouse population. We identified 12 significant pQTL that were located in cis and 6 that were in trans. Among them, we discovered that the presence of coding variants in the gene encoding for the Aryl Hydrocarbon Receptor (Ahr) had a significant effect on its abundance in plasma. Most interestingly, we identified variants in the Regulatory Factor X1 (Rfx1) gene that influence the abundance of the IL-17A protein in plasma.Conclusion: Our study reports an innovative pipeline for the identification of genetic modifiers that may be targeted for drug development.


Cell Systems ◽  
2017 ◽  
Vol 4 (1) ◽  
pp. 31-45.e6 ◽  
Author(s):  
Jean M. Winter ◽  
Derek E. Gildea ◽  
Jonathan P. Andreas ◽  
Daniel M. Gatti ◽  
Kendra A. Williams ◽  
...  

2017 ◽  
Vol 243 (3) ◽  
pp. 237-247 ◽  
Author(s):  
Alison H Harrill ◽  
Haixia Lin ◽  
Julia Tobacyk ◽  
John C Seely

Discovery and qualification of novel biomarkers with improved specificity and sensitivity for detection of xenobiotic-induced injuries is an area of active research across multiple sectors. However, the majority of efforts in this arena have used genetically limited rodent stocks that lack variability in xenobiotic responses inherent to genetically heterogeneous human populations. In this study, genetically diverse Diversity Outbred (DO) mice were used as a surrogate for human clinical populations to investigate performance of urinary kidney biomarkers against classical preclinical kidney injury biomarkers (blood urea nitrogen [BUN] and serum creatinine). In this study, cisplatin was used as a paradigm kidney toxicant, with female adult DO mice exposed to a single injection (5 mg/kg) of cisplatin or vehicle and necropsied 72 h post-exposure and 18 h following overnight urine collection. Interindividual variability in kidney toxicity was observed, with DO mice experiencing either no tubule cell necrosis or minimal-mild necrosis. A panel of urinary protein biomarkers and profiled miRNAs were assessed by receiver-operating characteristic curves as to their ability to distinguish non-responder versus responder animals, as defined by histopathological evidence of renal tubule cell necrosis. A surprising outcome of these studies was that BUN was elevated alongside of urinary miRNA and protein biomarkers in animals with grade 2 proximal tubular cell necrosis; but not elevated with grade 1 necrosis. These studies demonstrate a novel approach for using a rodent population to better assess sensitivity of candidate biomarkers, especially for proposed clinical applications. Impact statement Recent studies have indicated that several urinary proteins and miRNA species may be suitable as biomarkers for acute kidney injury. A major focus on biomarker qualification is demonstrating improved specificity and sensitivity over gold standard tests. In this study, a mouse population model, Diversity Outbred mice, was used to demonstrate that neither the urinary protein markers nor the miRNA species assayed in urine could reliably detect low severity kidney injury better than blood urea nitrogen. This study has implications for use of these biomarkers in the clinic, where interindividual heterogeneity is present within patient populations and for which the underlying tissue pathology may not be known.


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