Connecting high-dimensional mRNA and miRNA expression data for binary medical classification problems

2013 ◽  
Vol 111 (3) ◽  
pp. 592-601 ◽  
Author(s):  
Mathias Fuchs ◽  
Tim Beißbarth ◽  
Edgar Wingender ◽  
Klaus Jung
2015 ◽  
Vol 61 (11) ◽  
pp. 1333-1342 ◽  
Author(s):  
Heidi Schwarzenbach ◽  
Andreia Machado da Silva ◽  
George Calin ◽  
Klaus Pantel

Abstract BACKGROUND Different technologies, such as quantitative real-time PCR or microarrays, have been developed to measure microRNA (miRNA) expression levels. Quantification of miRNA transcripts implicates data normalization using endogenous and exogenous reference genes for data correction. However, there is no consensus about an optimal normalization strategy. The choice of a reference gene remains problematic and can have a serious impact on the actual available transcript levels and, consequently, on the biological interpretation of data. CONTENT In this review article we discuss the reliability of the use of small RNAs, commonly reported in the literature as miRNA expression normalizers, and compare different strategies used for data normalization. SUMMARY A workflow strategy is proposed for normalization of miRNA expression data in an attempt to provide a basis for the establishment of a global standard procedure that will allow comparison across studies.


2011 ◽  
Vol 40 (D1) ◽  
pp. D191-D197 ◽  
Author(s):  
Dawid Bielewicz ◽  
Jakub Dolata ◽  
Andrzej Zielezinski ◽  
Sylwia Alaba ◽  
Bogna Szarzynska ◽  
...  

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