scholarly journals 85. GENOME-WIDE-ASSOCIATION AND POLYGENIC ARCHITECTURE OF SINGLE AND RECURRENT DEPRESSION EPISODES IN A LARGE POPULATION-BASED SAMPLE

2021 ◽  
Vol 51 ◽  
pp. e85-e86
Author(s):  
Thomas Als ◽  
Jakob Grove ◽  
Janne Thirstrup ◽  
Veera Rajagopal ◽  
Jonas Bybjerg-Grauholm ◽  
...  
2019 ◽  
Vol 8 (2) ◽  
pp. 275 ◽  
Author(s):  
Eun Hong ◽  
Bong Kim ◽  
Steve Cho ◽  
Jin Yang ◽  
Hyuk Choi ◽  
...  

Genome-wide association studies found genetic variations with modulatory effects for intracranial aneurysm (IA) formations in European and Japanese populations. We aimed to identify the susceptibility of single nucleotide polymorphisms (SNPs) to IA in a Korean population consisting of 250 patients, and 294 controls using the Asian-specific Axiom Precision Medicine Research Array. Twenty-nine SNPs reached a genome-wide significance threshold (5 × 10−8). The rs371331393 SNP, with a stop-gain function of ARHGAP32 (11q24.3), showed the most significant association with the risk of IA (OR = 43.57, 95% CI: 21.84–86.95; p = 9.3 × 10−27). Eight out of 29 SNPs—GBA (rs75822236), TCF24 (rs112859779), OLFML2A (rs79134766), ARHGAP32 (rs371331393), CD163L1 (rs138525217), CUL4A (rs74115822), LOC102724084 (rs75861150), and LRRC3 (rs116969723)—demonstrated sufficient statistical power greater than or equal to 0.8. Two previously reported SNPs, rs700651 (BOLL, 2q33.1) and rs6841581 (EDNRA, 4q31.22), were validated in our GWAS (Genome-wide association study). In a subsequent analysis, three SNPs showed a significant difference in expressions: the rs6741819 (RNF144A, 2p25.1) was down-regulated in the adrenal gland tissue (p = 1.5 × 10−6), the rs1052270 (TMOD1. 9q22.33) was up-regulated in the testis tissue (p = 8.6 × 10−10), and rs6841581 (EDNRA, 4q31.22) was up-regulated in both the esophagus (p = 5.2 × 10−12) and skin tissues (1.2 × 10−6). Our GWAS showed novel candidate genes with Korean-specific variations in IA formations. Large population based studies are thus warranted.


2016 ◽  
Vol 55 (10) ◽  
pp. 896-905.e6 ◽  
Author(s):  
Christel M. Middeldorp ◽  
Anke R. Hammerschlag ◽  
Klaasjan G. Ouwens ◽  
Maria M. Groen-Blokhuis ◽  
Beate St. Pourcain ◽  
...  

PLoS ONE ◽  
2016 ◽  
Vol 11 (9) ◽  
pp. e0163048 ◽  
Author(s):  
Silvia Alemany ◽  
Natàlia Vilor-Tejedor ◽  
Mariona Bustamante ◽  
Jesús Pujol ◽  
Dídac Macià ◽  
...  

2021 ◽  
Vol 5 (Supplement_1) ◽  
pp. 679-680
Author(s):  
Anastasia Leshchyk ◽  
Giulio Genovese ◽  
Stefano Monti ◽  
Thomas Perls ◽  
Paola Sebastiani

Abstract Mosaic chromosomal alterations (mCAs) are structural alterations that include deletions, duplications, or copy-neutral loss of heterozygosity. mCAs are reported to be associated with survival, age, cancer, and cardiovascular disease. Previous studies of mCAs in large population-based cohorts (UK Biobank, MGBB, BioBank Japan, and FinnGen) have demonstrated a steady increase of mCAs as people age. The distribution of mCAs in centenarians and their offspring is not well characterized. We applied MOsaic CHromosomal Alteration (MoChA) caller on 2298 genome-wide genotype samples of 1582 centenarians, 443 centenarians’ offspring, and 273 unrelated controls from the New England Centenarian Study (NECS). Integrating Log R ratio and B-allele frequency (BAF) intensities with genotype phase information, MoChA employs a Hidden Markov Model to detect mCA-induced deviations in allelic balance at heterozygous sites consistent with genotype phase in the DNA microarray data. We analyzed mCAs spanning over 100 k base pairs, with an estimated cell fraction less than 50%, within samples with genome-wide BAF phase concordance across phased heterozygous sites less than 0.51, and with LOD score of more than 10 for the model based on BAF and genotype phase. Our analysis showed that somatic mCAs increase with older age up to approximately 102 years, but the prevalence of the subjects with mCAs tend to decrease after that age, thus suggesting that accumulation of mCAs is less prevalent in long-lived individuals. We also used Poisson regression to show that centenarians and their offspring tend to accumulate less mCA (RR = 0.63, p=0.045) compared to the controls.


2010 ◽  
Vol 167 (8) ◽  
pp. 949-957 ◽  
Author(s):  
Cathryn M. Lewis ◽  
Mandy Y. Ng ◽  
Amy W. Butler ◽  
Sarah Cohen-Woods ◽  
Rudolf Uher ◽  
...  

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