scholarly journals Gene expression signatures in the newt irises during lens regeneration

FEBS Letters ◽  
2007 ◽  
Vol 581 (9) ◽  
pp. 1865-1870 ◽  
Author(s):  
Evgeny Makarev ◽  
Mindy K. Call ◽  
Matthew W. Grogg ◽  
Donald L. Atkinson ◽  
Brett Milash ◽  
...  
eLife ◽  
2015 ◽  
Vol 4 ◽  
Author(s):  
Konstantinos Sousounis ◽  
Feng Qi ◽  
Manisha C Yadav ◽  
José Luis Millán ◽  
Fubito Toyama ◽  
...  

Newts have the ability to repeatedly regenerate their lens even during ageing. However, it is unclear whether this regeneration reflects an undisturbed genetic activity. To answer this question, we compared the transcriptomes of lenses, irises and tails from aged newts that had undergone lens regeneration 19 times with the equivalent tissues from young newts that had never experienced lens regeneration. Our analysis indicates that repeatedly regenerated lenses showed a robust transcriptional program comparable to young never-regenerated lenses. In contrast, the tail, which was never regenerated, showed gene expression signatures of ageing. Our analysis strongly suggests that, with respect to gene expression, the regenerated lenses have not deviated from a robust transcriptional program even after multiple events of regeneration throughout the life of the newt. In addition, our study provides a new paradigm in biology, and establishes the newt as a key model for the study of regeneration in relation to ageing.


2018 ◽  
Author(s):  
Chen-Tsung Huang ◽  
Chiao-Hui Hsieh ◽  
Yun-Hsien Chung ◽  
Yen-Jen Oyang ◽  
Hsuan-Cheng Huang ◽  
...  

2020 ◽  
Vol 31 (4) ◽  
pp. 716-730 ◽  
Author(s):  
Marc Johnsen ◽  
Torsten Kubacki ◽  
Assa Yeroslaviz ◽  
Martin Richard Späth ◽  
Jannis Mörsdorf ◽  
...  

BackgroundAlthough AKI lacks effective therapeutic approaches, preventive strategies using preconditioning protocols, including caloric restriction and hypoxic preconditioning, have been shown to prevent injury in animal models. A better understanding of the molecular mechanisms that underlie the enhanced resistance to AKI conferred by such approaches is needed to facilitate clinical use. We hypothesized that these preconditioning strategies use similar pathways to augment cellular stress resistance.MethodsTo identify genes and pathways shared by caloric restriction and hypoxic preconditioning, we used RNA-sequencing transcriptome profiling to compare the transcriptional response with both modes of preconditioning in mice before and after renal ischemia-reperfusion injury.ResultsThe gene expression signatures induced by both preconditioning strategies involve distinct common genes and pathways that overlap significantly with the transcriptional changes observed after ischemia-reperfusion injury. These changes primarily affect oxidation-reduction processes and have a major effect on mitochondrial processes. We found that 16 of the genes differentially regulated by both modes of preconditioning were strongly correlated with clinical outcome; most of these genes had not previously been directly linked to AKI.ConclusionsThis comparative analysis of the gene expression signatures in preconditioning strategies shows overlapping patterns in caloric restriction and hypoxic preconditioning, pointing toward common molecular mechanisms. Our analysis identified a limited set of target genes not previously known to be associated with AKI; further study of their potential to provide the basis for novel preventive strategies is warranted. To allow for optimal interactive usability of the data by the kidney research community, we provide an online interface for user-defined interrogation of the gene expression datasets (http://shiny.cecad.uni-koeln.de:3838/IRaP/).


Cancer ◽  
2009 ◽  
Vol 115 (16) ◽  
pp. 3738-3748 ◽  
Author(s):  
Chiara Braconi ◽  
Fanyin Meng ◽  
Erica Swenson ◽  
Lyudmyla Khrapenko ◽  
Nianyuan Huang ◽  
...  

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