scholarly journals Replaceability of Schiff base proton donors in light-driven proton pump rhodopsins

2021 ◽  
pp. 101013
Author(s):  
Syogo Sasaki ◽  
Jun Tamogami ◽  
Koki Nishiya ◽  
Makoto Demura ◽  
Takashi Kikukawa
2013 ◽  
Vol 288 (29) ◽  
pp. 21254-21265 ◽  
Author(s):  
Sergei P. Balashov ◽  
Lada E. Petrovskaya ◽  
Eleonora S. Imasheva ◽  
Evgeniy P. Lukashev ◽  
Andrei K. Dioumaev ◽  
...  

A lysine instead of the usual carboxyl group is in place of the internal proton donor to the retinal Schiff base in the light-driven proton pump of Exiguobacterium sibiricum (ESR). The involvement of this lysine in proton transfer is indicated by the finding that its substitution with alanine or other residues slows reprotonation of the Schiff base (decay of the M intermediate) by more than 2 orders of magnitude. In these mutants, the rate constant of the M decay linearly decreases with a decrease in proton concentration, as expected if reprotonation is limited by the uptake of a proton from the bulk. In wild type ESR, M decay is biphasic, and the rate constants are nearly pH-independent between pH 6 and 9. Proton uptake occurs after M formation but before M decay, which is especially evident in D2O and at high pH. Proton uptake is biphasic; the amplitude of the fast phase decreases with a pKa of 8.5 ± 0.3, which reflects the pKa of the donor during proton uptake. Similarly, the fraction of the faster component of M decay decreases and the slower one increases, with a pKa of 8.1 ± 0.2. The data therefore suggest that the reprotonation of the Schiff base in ESR is preceded by transient protonation of an initially unprotonated donor, which is probably the ϵ-amino group of Lys-96 or a water molecule in its vicinity, and it facilitates proton delivery from the bulk to the reaction center of the protein.


2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Keiichi Kojima ◽  
Susumu Yoshizawa ◽  
Masumi Hasegawa ◽  
Masaki Nakama ◽  
Marie Kurihara ◽  
...  

AbstractThe photoreactive protein rhodopsin is widespread in microorganisms and has a variety of photobiological functions. Recently, a novel phylogenetically distinctive group named ‘schizorhodopsin (SzR)’ has been identified as an inward proton pump. We performed functional and spectroscopic studies on an uncharacterised schizorhodopsin from the phylum Lokiarchaeota archaeon. The protein, LaSzR2, having an all-trans-retinal chromophore, showed inward proton pump activity with an absorption maximum at 549 nm. The pH titration experiments revealed that the protonated Schiff base of the retinal chromophore (Lys188, pKa = 12.3) is stabilised by the deprotonated counterion (presumably Asp184, pKa = 3.7). The flash-photolysis experiments revealed the presence of two photointermediates, K and M. A proton was released and uptaken from bulk solution upon the formation and decay of the M intermediate. During the M-decay, the Schiff base was reprotonated by the proton from a proton donating residue (presumably Asp172). These properties were compared with other inward (SzRs and xenorhodopsins, XeRs) and outward proton pumps. Notably, LaSzR2 showed acid-induced spectral ‘blue-shift’ due to the protonation of the counterion, whereas outward proton pumps showed opposite shifts (red-shifts). Thus, we can distinguish between inward and outward proton pumps by the direction of the acid-induced spectral shift.


Biochemistry ◽  
2012 ◽  
Vol 51 (29) ◽  
pp. 5748-5762 ◽  
Author(s):  
S. P. Balashov ◽  
L. E. Petrovskaya ◽  
E. P. Lukashev ◽  
E. S. Imasheva ◽  
A. K. Dioumaev ◽  
...  
Keyword(s):  

1984 ◽  
Vol 39 (1) ◽  
pp. 75-79 ◽  
Author(s):  
JOSEPH M. FUKUMOTO ◽  
JANE H. HANAMOTO ◽  
M. A. EL-SAYED
Keyword(s):  

Energies ◽  
2021 ◽  
Vol 14 (18) ◽  
pp. 5723
Author(s):  
Ruggero Bonetto ◽  
Daniel Civettini ◽  
Francesco Crisanti ◽  
Andrea Sartorel

The characterization of competent intermediates of metal complexes, involved in catalytic transformations for the activation of small molecules, is an important target for mechanistic comprehension and catalyst design. Iron complexes deserve particular attention, due to the rich chemistry of iron that allows their application both in oxidation and reduction processes. In particular, iron complexes with tetradentate Schiff base ligands show the possibility to electrochemically generate FeI intermediates, capable of reacting with carbon dioxide. In this work, we investigate the electronic and spectroscopic features of FeI intermediates in five Fe(LN2O2) complexes, and evaluate the electrocatalytic reduction of CO2 in the presence of phenol (PhOH) or trifluoroethanol (TFE) as proton donors. The main findings include: (i) a correlation of the potentials of the FeII/I couples with the electronic character of the LN2O2 ligand and the energy of the metal-to-ligand charge transfer absorption of FeI species (determined by spectroelectrochemistry, SEC-UV/Vis); (ii) the reactivity of FeI species with CO2, as proven by cyclic voltammetry and SEC-UV/Vis; (iii) the identification of Fe(salen) as a competent homogeneous electrocatalyst for CO2 reduction to CO, in the presence of phenol or trifluoroethanol proton donors (an overpotential of 0.91 V, a catalytic rate constant estimated at 5 × 104 s−1, and a turnover number of 4); and (iv) the identification of sudden, ligand-assisted decomposition routes for complexes bearing a ketylacetoneimine pendant, likely associated with the protonation under cathodic conditions of the ligands.


Author(s):  
Alok K Mitra ◽  
Larry J. W. Miercke ◽  
Mary C. Betlach ◽  
Richard F. Shand ◽  
Robert M. Stroud

Bacterorhodopsin (BR) is an integral membrane protein present in the purple membrane (PM) of Halobacterium halobium where it is arranged in a highly ordered 2-dimensional hexagonal P3 lattice. BR contains a single retinylidene chromophore bound via a protonated Schiff base to Lys-216 and functions as a light-driven proton pump. Upon absorption of a photon, BR cycles through a series of photointermediates resulting in a vectorial pumping of a proton from the intracellular side to the extracellular side. Site-directed mutagenesis has identified residues whose substitution affects the chromophore environment in BR and those that are involved in the proton transport. Specifically Asp-85, Asp-212, and Arg-82 are involved in the proton release pathway, whereas Asp-96 is involved in Schiff base reprotonation.


2021 ◽  
Author(s):  
Cyril Rajnák ◽  
Romana Mičová ◽  
Ján Moncoľ ◽  
Ľubor Dlháň ◽  
Christoph Krüger ◽  
...  

A pentadentate Schiff-base ligand 3,5Cl-L2− and NCSe− form a iron(iii) mononuclear complex [Fe(3,5Cl-L)(NCSe)], which shows a thermally induced spin crossover with a broad hysteresis width of 24 K between 123 K (warming) and 99 K (cooling).


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