scholarly journals Complete genome sequence of the first human parechovirus type 3 isolated in Taiwan

2017 ◽  
Vol 80 (11) ◽  
pp. 737-739 ◽  
Author(s):  
Jenn-Tzong Chang ◽  
Chih-Shiang Yang ◽  
Bao-Chen Chen ◽  
Yao-Shen Chen ◽  
Tsung-Hsien Chang
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Human Parechovirus ◽  
Type 3

scholarly journals Complete Genome Sequence of a Duck Hepatitis A Virus Type 3 Identified in Eastern China

2012 ◽  
Vol 86 (24) ◽  
pp. 13848-13848 ◽  
Author(s):  
Q. Xu ◽  
R. Zhang ◽  
L. Chen ◽  
L. Yang ◽  
J. Li ◽  
...  
Keyword(s):  
Virus Type ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Hepatitis A ◽  
Hepatitis A Virus ◽  
Eastern China ◽  
Duck Hepatitis ◽  
Type 3

scholarly journals The complete genome sequence of Xanthomonas theicola, the causal agent of canker on tea plants, reveals novel secretion systems in clade-1 xanthomonads

2020 ◽  
Author(s):  
Ralf Koebnik ◽  
Daiva Burokiene ◽  
Claude Bragard ◽  
Christine Chang ◽  
Marion Fischer-Le Saux ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Secretion System ◽  
Causal Agent ◽  
Type 3 Secretion System ◽  
Tea Plants ◽  
Clade 1 ◽  
Type 3

Xanthomonas theicola is the causal agent of bacterial canker on tea plants. There is no complete genome sequence available for X. theicola, a close relative of the species X. translucens and X. hyacinthi, thus limiting basic research for this group of pathogens. Here we release a high-quality complete genome sequence for the X. theicola type strain, CFBP 4691T. Single-molecule real-time sequencing with a mean coverage of 264X revealed two contigs of 4,744,641 bp (chromosome) and 40,955 bp (plasmid) in size. Genome mining revealed the presence of non-ribosomal peptide synthases, two CRISPR systems, the Xps type 2 secretion system, and the Hrp type 3 secretion system. Surprisingly, this strain encodes an additional type 2 secretion system and a novel type 3 secretion system with enigmatic function, hitherto undescribed for xanthomonads. Four type 3 effector genes were found on complete or partial transposons, suggesting a role of transposons in effector gene evolution and spread. This genome sequence fills an important gap to better understand the biology and evolution of the early-branching xanthomonads, also known as clade-1 xanthomonads.

scholarly journals First detection of porcine circovirus type 3 in Colombia and the complete genome sequence demonstrates the circulation of PCV 3a1 and PCV 3a2

2019 ◽  
Vol 5 (2) ◽  
pp. 182-188 ◽  
Author(s):  
Diana S. Vargas‐Bermudez ◽  
Fabricio S. Campos ◽  
Laura Bonil ◽  
Darío Mogollon ◽  
Jairo Jaime
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Porcine Circovirus Type ◽  
Porcine Circovirus ◽  
Type 3

scholarly journals Isolation, identification, and complete genome sequence of a bovine adenovirus type 3 from cattle in China

2011 ◽  
Vol 8 (1) ◽  
pp. 557 ◽  
Author(s):  
Yuan-Mao Zhu ◽  
Zuo Yu ◽  
Hong Cai ◽  
Yu-Ran Gao ◽  
Xiu-Mei Dong ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Adenovirus Type ◽  
Bovine Adenovirus ◽  
Bovine Adenovirus Type 3 ◽  
Type 3

scholarly journals Surveillance, isolation and complete genome sequence of bovine parainfluenza virus type 3 in Egyptian cattle

2017 ◽  
Vol 5 (1) ◽  
pp. 8-13 ◽  
Author(s):  
Nader M. Sobhy ◽  
Sunil K. Mor ◽  
Iman M. Bastawecy ◽  
Hiam M. Fakhry ◽  
Christiana R.B. Youssef ◽  
...  
Keyword(s):  
Virus Type ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Parainfluenza Virus ◽  
Type 3 ◽  
Bovine Parainfluenza Virus

scholarly journals Complete Genome Sequence of a Novel Porcine Circovirus Type 3 Strain, PCV3/CN/Hubei-618/2016, Isolated from China

2017 ◽  
Vol 5 (15) ◽  
Author(s):  
Shengxian Fan ◽  
Xugang Ku ◽  
Fangzhou Chen ◽  
Ying Wang ◽  
Xuexiang Yu ◽  
...  
Keyword(s):  
United States ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
The United States ◽  
Porcine Circovirus Type ◽  
Porcine Circovirus ◽  
Genetic Characteristics ◽  
Type 3

ABSTRACT In October 2016, porcine circovirus type 3 (PCV3) was identified as a pathogen agent for pigs in the United States. Here, we report the genome sequence of a Chinese PCV3 strain, PCV3/CN/Hubei-618/2016. This will help us better understand the epidemiology and genetic characteristics of PCV3.

scholarly journals The Complete Genome Sequence of a Human Parechovirus from a Child with Diarrhea in China Revealed Intertypic Recombination

2017 ◽  
Vol 5 (21) ◽  
Author(s):  
Xiaoying Zhao ◽  
Chenglin Zhou ◽  
Xiaodan Zhang ◽  
Wang Li ◽  
Xinyu Wan ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Phylogenetic Trees ◽  
Recombination Breakpoint ◽  
Recombination Analysis ◽  
Human Parechovirus ◽  
Topological Structures ◽  
Genomic Regions

ABSTRACT A human parechovirus (HPeV), CH-ZXY1, was detected in feces from a child with diarrhea. Phylogenetic trees over three different genomic regions revealed discordant topological structures. Recombination analysis indicates that CH-ZXY1 is a recombinant resulting from recombination between HPeV5 and HPeV1, which was confirmed by PCR covering the recombination breakpoint.

scholarly journals Complete Genome Sequence of a Novel Type of Human Parechovirus Strain Reveals Natural Recombination Events

2012 ◽  
Vol 86 (16) ◽  
pp. 8892-8893 ◽  
Author(s):  
Guangming Sun ◽  
Yong Wang ◽  
Gang Tao ◽  
Quan Shen ◽  
Weiping Cao ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Recombination Event ◽  
Open Reading Frame ◽  
Human Parechovirus ◽  
Content Type ◽  
Reading Frame ◽  
Natural Recombination ◽  
Genomic Recombination

Human parechoviruses (HPeVs) are a species in theParechovirusgenus of thePicornaviridaefamily. We report a complete genome sequence of a novel HPeV strain, CH-ZJ1, that was found in an infant with gastroenteritis in Zhenjiang City, China. The complete genome consists of 7,298 nucleotides (nt), excluding the 3′ poly(A) tail; the open reading frame is mapped between nucleotide positions 654 and 7211 and encodes a 2,185-amino acid (aa) polyprotein. The phylogenetic tree obtained for the complete genome of this HPeV strain and the other HpeV strains available in GenBank indicated that CH-ZJ1 is intervenient between HpeV type 4 (HpeV4) and HpeV5. Phylogenetic analysis based on the 3D and VP1 genes reveals two incongruent trees. Recombination detection indicated that CH-ZJ1 might be a recombinant which was produced by more than one genomic recombination event that occurred among HPeV1, HPeV4, and HPeV3 strains.

scholarly journals Genome Sequence of Novel Human Parechovirus Type 17

2017 ◽  
Vol 5 (8) ◽  
Author(s):  
Sindy Böttcher ◽  
Patrick E. Obermeier ◽  
Sabine Diedrich ◽  
Yolande Kaboré ◽  
Rossella D’Alfonso ◽  
...  
Keyword(s):  
Amino Acids ◽  
Early Childhood ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Study Group ◽  
Human Parechovirus ◽  
Broad Variety

ABSTRACT Human parechoviruses (HPeV) circulate worldwide, causing a broad variety of symptoms, preferentially in early childhood. We report here the nearly complete genome sequence of a novel HPeV type, consisting of 7,062 nucleotides and encoding 2,179 amino acids. M36/CI/2014 was taxonomically classified as HPeV-17 by the picornavirus study group.

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