Co-cultivation of T. asperellum GDFS1009 and B. amyloliquefaciens 1841: Strategy to regulate the production of ligno-cellulolytic enzymes for the lignocellulose biomass degradation

2022 ◽  
Vol 301 ◽  
pp. 113833
Author(s):  
Valliappan Karuppiah ◽  
Lu Zhixiang ◽  
Hongyi Liu ◽  
Vallikkannu Murugappan ◽  
Subramanian Kumaran ◽  
...  
2020 ◽  
Vol 19 (3) ◽  
pp. 649-649 ◽  
Author(s):  
Santosh Thapa ◽  
Jitendra Mishra ◽  
Naveen Kumar Arora ◽  
Priya Mishra ◽  
Hui Li ◽  
...  

1995 ◽  
Vol 24 (4) ◽  
pp. 219-225
Author(s):  
Nigel Halliwell ◽  
Geoffrey Halliwell

Vast amounts of lignocellulose/biomass are available, both naturally and as agricultural wastes, for exploitation as sources of chemical feedstocks, fuels, foods and feeds. In fact, cellulose is the only renewable biological resource available in sufficient quantity to support such large-scale industrial processes. The major constraints to these conversions and the utilization of lignocellulosic materials are economic. Apart from specially grown biomass crops the cellulose and hemicelluloses from crop residues show considerable potential for exploitation, especially as fossil fuels become depleted and less accessible. The problems may appear great but so too are the rewards.


2014 ◽  
Author(s):  
Sebastian Gil Anthony Konietzny ◽  
Phillip Byron Pope ◽  
Aaron Weimann ◽  
Alice Carolyn McHardy

Background: Efficient industrial processes for converting plant lignocellulosic materials into biofuels are a key challenge in global efforts to use alternative energy sources to fossil fuels. Novel cellulolytic enzymes have been discovered from microbial genomes and metagenomes of microbial communities. However, the identification of relevant genes without known homologs, and elucidation of the lignocellulolytic pathways and protein complexes for different microorganisms remain a challenge. Results: We describe a new computational method for the targeted discovery of functional modules of plant biomass-degrading protein families based on their co-occurrence patterns across genomes and metagenome datasets, and the strength of association of these modules with the genomes of known degraders. From more than 6.4 million family annotations for 2884 microbial genomes and 332 taxonomic bins from 18 metagenomes, we identified five functional modules that are distinctive for plant biomass degraders, which we call plant biomass degradation modules (PDMs). These modules incorporated protein families involved in the degradation of cellulose, hemicelluloses and pectins, structural components of the cellulosome and additional families with potential functions in plant biomass degradation. The PDMs could be linked to 81 gene clusters in genomes of known lignocellulose degraders, including previously described clusters of lignocellulolytic genes. On average, 70% of the families of each PDM mapped to gene clusters in known degraders, which served as an additional confirmation of their functional relationships. The presence of a PDM in a genome or taxonomic metagenome bin allowed us to predict an organism's ability for plant biomass degradation accurately. For 15 draft genomes of a cow rumen metagenome, we validated by cross-linking with confirmed cellulolytic enzymes that the PDMs identified plant biomass degraders within a complex microbial community. Conclusions: Functional modules of protein families that realize different aspects of plant cell wall degradation can be inferred from co-occurrence patterns across (meta-)genomes with a probabilistic topic model. The PDMs represent a new resource of protein families and candidate genes implicated in microbial plant biomass degradation. They can be used to predict the ability to degrade plant biomass for a genome or taxonomic bin. The method would also be suitable for characterizing other microbial phenotypes.


2020 ◽  
Vol 19 (3) ◽  
pp. 621-648 ◽  
Author(s):  
Santosh Thapa ◽  
Jitendra Mishra ◽  
Naveen Arora ◽  
Priya Mishra ◽  
Hui Li ◽  
...  

Author(s):  
Abhinav Kumar ◽  
Rajaram Bal ◽  
Rajendra Srivastava

Furfural (FAL) and 5-hydroxymethylfurfural (HMF) are important and sustainable platform chemicals. They are produced from lignocellulose biomass and attract significant attention as precursors for producing value-added chemicals and fuels. The...


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Chiranjeevi Thulluri ◽  
Ravi Balasubramaniam ◽  
Harshad Ravindra Velankar

AbstractCellulolytic enzymes can readily access the cellulosic component of lignocellulosic biomass after the removal of lignin during biomass pretreatment. The enzymatic hydrolysis of cellulose is necessary for generating monomeric sugars, which are then fermented into ethanol. In our study, a combination of a deep eutectic (DE) mixture (of 2-aminoethanol and tetra-n-butyl ammonium bromide) and a cyclic ether (tetrahydrofuran) was used for selective delignification of rice straw (RS) under mild conditions (100 °C). Pretreatment with DE-THF solvent system caused ~ 46% delignification whereas cellulose (~ 91%) and hemicellulose (~ 67%) recoveries remained higher. The new solvent system could be reused upto 10 subsequent cycles with the same effectivity. Interestingly, the DE-THF pretreated cellulose showed remarkable enzymatic hydrolysability, despite an increase in its crystallinity to 72.3%. Contrary to conventional pretreatments, we report for the first time that the enzymatic hydrolysis of pretreated cellulose is enhanced by the removal of lignin during DE-THF pretreatment, notwithstanding an increase in its crystallinity. The current study paves way for the development of newer strategies for biomass depolymerization with DES based solvents.


2021 ◽  
Vol 20 (1) ◽  
Author(s):  
Valliappan Karuppiah ◽  
Lu Zhixiang ◽  
Hongyi Liu ◽  
Murugappan Vallikkannu ◽  
Jie Chen

Abstract Background Retention of agricultural bio-mass residues without proper treatment could affect the subsequent plant growth. In the present investigation, the co-cultivation of genetically engineered T. asperellum and B. amyloliquefaciens has been employed for multiple benefits including the enrichment of lignocellulose biodegradation, plant growth, defense potential and disease resistance. Results The Vel1 gene predominantly regulates the secondary metabolites, sexual and asexual development as well as cellulases and polysaccharide hydrolases productions. Overexpression mutant of the Trichoderma asperellum Vel1 locus (TA OE-Vel1) enhanced the activity of FPAase, CMCase, PNPCase, PNPGase, xylanase I, and xylanase II through the regulation of transcription regulating factors and the activation of cellulase and xylanase encoding genes. Further, these genes were induced upon co-cultivation with Bacillus amyloliquefaciens (BA). The co-culture of TA OE-Vel1 + BA produced the best composition of enzymes and the highest biomass hydrolysis yield of 89.56 ± 0.61%. The co-culture of TA OE-Vel1 + BA increased the corn stover degradation by the secretion of cellulolytic enzymes and maintained the C/N ratio of the corn stover amended soil. Moreover, the TA OE-Vel1 + BA increased the maize plant growth, expression of defense gene and disease resistance against Fusarium verticillioides and Cohilohorus herostrophus. Conclusion The co-cultivation of genetically engineered T. asperellum and B. amyloliquefaciens could be utilized as a profound and meaningful technique for the retention of agro residues and subsequent plant growth.


Author(s):  
Gregory S Bulmer ◽  
Ashley Philip Mattey ◽  
Fabio Parmeggiani ◽  
Ryan Williams ◽  
Helene Ledru ◽  
...  

Promiscuous activity of a glycosyltransferase was exploited to polymerise glucose from UDP-glucose via the generation of β-1,4-glycosidic linkages. The biocatalyst was incorporated into biocatalytic cascades and chemo-enzymatic strategies to synthesise...


2016 ◽  
Vol 52 (6) ◽  
pp. 638-642 ◽  
Author(s):  
E. Yu. Kozhevnikova ◽  
D. A. Petrova ◽  
D. S. Kopitsyn ◽  
A. A. Novikov ◽  
A. V. Shnyreva ◽  
...  

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