Thermal mixing and stratification often appears in passive containment cooling system (PCCS), which is an important part of passive safety system. So, it is important to accurately predict the temperature and density distributions both for design optimization and accident analysis. However, current major reactor system analysis codes only provide lumped parameter models which can only get very approximate results. The traditional 2-D or 3-D CFD methods require very long simulation time, and it’s not easy to get result. This paper adopts a new simulation code, which can be used to calculate heat transfer problems in large enclosures. The new code simulates the ambient fluid and jets with different models. For the ambient fluid, it uses a one-dimensional model, which is based on the thermal stratification and derived from three conservation equations. While for different jets, the new code contains several jet models to fully simulate the different break types in containment. Now, the new code can only simulate rectangular enclosures, not the cylinder enclosure. So it is meaningful for us to modify the code to simulate the actual containment, then it can be applied to solve the heat transfer problem in PCCS accurately.