scholarly journals Assessing the impact of COVID-19 border restrictions on dengue transmission in Yunnan Province, China: an observational epidemiological and phylogenetic analysis

2021 ◽  
Vol 14 ◽  
pp. 100259
Author(s):  
Naizhe Li ◽  
Yun Feng ◽  
Bram Vrancken ◽  
Yuyang Chen ◽  
Lu Dong ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Yunnan Province ◽  
Dengue Transmission ◽  
The Impact

scholarly journals Postinoculation Protozoan Establishment and Association Patterns of Methanogenic Archaea in the Ovine Rumen

2007 ◽  
Vol 73 (14) ◽  
pp. 4609-4618 ◽  
Author(s):  
Samuel Ohene-Adjei ◽  
Ronald M. Teather ◽  
Michael Ivan ◽  
Robert J. Forster
Keyword(s):  
Phylogenetic Analysis ◽  
Denaturing Gradient Gel Electrophoresis ◽  
Methanogenic Archaea ◽  
Type A ◽  
Negative Control ◽  
Rrna Gene ◽  
Association Patterns ◽  
Clone Libraries ◽  
Symbiotic Relationships ◽  
The Impact

ABSTRACT Association patterns between archaea and rumen protozoa were evaluated by analyzing archaeal 16S rRNA gene clone libraries from ovine rumen inoculated with different protozoa. Five protozoan inoculation treatments, fauna free (negative control), holotrich and cellulolytic protozoa, Isotricha and Dasytricha spp., Entodinium spp., and total fauna (type A) were tested. We used denaturing gradient gel electrophoresis, quantitative PCR, and phylogenetic analysis to evaluate the impact of the protozoan inoculants on the respective archaeal communities. Protozoan 18S ribosomal DNA clone libraries were also evaluated to monitor the protozoal population that was established by the inoculation. Phylogenetic analysis suggested that archaeal clones associated with the fauna-free, the Entodinium, and the type A inoculations clustered primarily with uncultured phylotypes. Polyplastron multivesiculatum was the predominant protozoan strain established by the holotrich and cellulolytic protozoan treatment, and this resulted predominantly in archaeal clones affiliated with uncultured and cultured methanogenic phylotypes (Methanosphaera stadtmanae, Methanobrevibacter ruminantium, and Methanobacterium bryantii). Furthermore, the Isotricha and Dasytricha inoculation treatment resulted primarily in archaeal clones affiliated with Methanobrevibacter smithii. This report provides the first assessment of the influence of protozoa on archaea within the rumen microbial community and provides evidence to suggest that different archaeal phylotypes associate with specific groups of protozoa. The observed patterns may be linked to the evolution of commensal and symbiotic relationships between archaea and protozoa in the ovine rumen environment. This report further underscores the prevalence and potential importance of a rather large group of uncultivated archaea in the ovine rumen, probably unrelated to known methanogens and undocumented in the bovine rumen.

The impact of comprehensive prevention of mother-to-child HIV transmission in Dehong prefecture, Yunnan province, 2005–2010: a hard-hit area by HIV in Southern China

2013 ◽  
Vol 25 (4) ◽  
pp. 253-260 ◽  
Author(s):  
Duo Shan ◽  
Jiangping Sun ◽  
Kaveh Khoshnood ◽  
Jeannia Fu ◽  
Song Duan ◽  
...  
Keyword(s):  
Yunnan Province ◽  
Hiv Transmission ◽  
Southern China ◽  
The Impact ◽  
Mother To Child

scholarly journals Meiogyne oligocarpa (Annonaceae), a new species from Yunnan, China

PeerJ ◽  
2021 ◽  
Vol 9 ◽  
pp. e10999
Author(s):  
Bine Xue ◽  
Yun-Yun Shao ◽  
Chun-Fen Xiao ◽  
Ming-Fai Liu ◽  
Yongquan Li ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Yunnan Province ◽  
Southwest China ◽  
A New Species

Meiogyne oligocarpa sp. nov. (Annonaceae) is described from Yunnan Province in Southwest China. It is easily distinguished from all previously described Meiogyne species by the possession of up to four carpels per flower, its bilobed, sparsely hairy stigma, biseriate ovules and cylindrical monocarps with a beaked apex. A phylogenetic analysis was conducted to confirm the placement of this new species within Meiogyne. Meiogyne oligocarpa represents the second species of Meiogyne in China: a key to the species of Meiogyne in China is provided to distinguish it from Meiogyne hainanensis. Paraffin sectioning was undertaken to study the anatomy of the corrugations on the inner petals of Meiogyne oligocarpa to verify whether they are glandular.

scholarly journals Hantavirus host/virus interactions within Southeast Europe

2004 ◽  
Vol 4 (4) ◽  
pp. 13-18 ◽  
Author(s):  
Jerrold J. Scharninghausen ◽  
Michael Faulde ◽  
Semra Cavaljuga
Keyword(s):  
Phylogenetic Analysis ◽  
Cytochrome B ◽  
Geographic Area ◽  
Southeast Europe ◽  
Host Interactions ◽  
Single Host ◽  
Actual Environment ◽  
Genetic Sequences ◽  
Host Virus Interactions ◽  
The Impact

Viral studies have historically approached their phylogenetic analysis without consideration of the impact of the role the host plays in evolution. Our study examines host/viral interactions through analysis of the phylogenetic relationship between hantavirus genetic sequences and host cytochrome B sequences. Phylogenetic analysis of known Hantavirus genetic sequences were performed using PAUP 3.1.1 (vers. 4.0.0d64). Only sequences available through GENBANK were analyzed. Phylogenetic analysis of hantavirus sequences revealed distinct patterns based upon geographic area. These patterns coincided with the known ranges of reservoir hosts. Multiple hosts for individual viruses and multiple viruses in a single host species for hantaviruses have been described. This may be due to accidental exposure, host-switching, co-speciation, or broad co-accommodation. Since the host is the actual environment that the virus survives in, changes in the host over time could potentially directly influence changes in the virus. Multiple viruses and hosts collide in Southeastern Europe increasing the prospect of finding distinct viral/host relationships. Rodent Cytochrome B is very well conserved and can be used to tract host lineage. By tracking the relationship of infected hosts, we theorize that patterns in host DNA will emerge that will mirror patterns in viral sequences. This analysis of the host DNA could provide an understanding into the causes of variation in hantaviral sequences, pathogenicity, transmissibility, infectivity, viral range and expand our knowledge of viral/host interactions. Surveillance for viruses in the field should include analysis of the host DNA in combination with the viral analysis.

scholarly journals Identification of domestic cat hepadnavirus from a cat blood sample in Japan

2022 ◽  
Author(s):  
Kazuki Takahashi ◽  
Yasuyuki Kaneko ◽  
Akiko Shibanai ◽  
Shushi Yamamoto ◽  
Ayana Katagiri ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Chronic Hepatitis ◽  
Blood Sample ◽  
Domestic Cat ◽  
Hepatic Cancer ◽  
Infection Status ◽  
Domestic Cats ◽  
Hepatic Diseases ◽  
B Virus ◽  
The Impact

The hepatitis B virus (Hepadnaviridae) induces chronic hepatitis and hepatic cancer in humans. A novel domestic cat hepadnavirus (DCH) was recently identified in several countries, however, the DCH infection status of cats in Japan is unknown. Therefore, we investigated the DCH infection rate of 139 cat samples collected in Japan. We identified one positive blood sample (0.78%) from a 17-year-old female cat with chronically elevated alanine aminotransferase. Phylogenetic analysis demonstrated that the DCH strain identified in this study is genetically distinct from strains in other countries. Further investigations are required to elucidate the evolution of DCH and the impact of DCH infection on hepatic diseases in domestic cats.

scholarly journals Impact of the Inflow Population From Outbreak Areas on the COVID-19 Epidemic in Yunnan Province and the Recommended Control Measures: A Preliminary Study

2020 ◽  
Vol 8 ◽  
Author(s):  
Zhong Sun ◽  
Guozhong He ◽  
Ninghao Huang ◽  
Hongyu Chen ◽  
Shuwei Zhang ◽  
...  
Keyword(s):  
Prevention And Control ◽  
Yunnan Province ◽  
Clinical Manifestations ◽  
Control Measures ◽  
Proper Management ◽  
Outbreak Areas ◽  
Prevention And Control Measures ◽  
And Gender ◽  
And Control ◽  
The Impact

Background: COVID-19 developed into a global pandemic in 2020 and poses challenges regarding the prevention and control capabilities of countries. A large number of inbound travelers from other regions could lead to a renewed outbreak of COVID-19 in the local regions. Globally, as a result of the imbalance in the control of the epidemic, all countries are facing the risk of a renewed COVID-19 outbreak brought about by travelers from epidemic areas. Therefore, studies on a proper management of the inbound travelers are urgent.Methods: We collected a total of 4,733,414 inbound travelers and 174 COVID-19 diagnosed patients in Yunnan province from 21 January 2020 to 20 February 2020. Data on place of origin, travel history, age, and gender, as well as whether they had suspected clinical manifestations for inbound travelers in Yunnan were collected. The impact of inbound travelers on the local epidemic was analyzed with a collinear statistical analysis and the effect of the control measures on the epidemic was evaluated with a sophisticated modeling approach.Results: Of the 174 COVID-19 patients, 60.9% were not from Yunnan, and 76.4% had a history of travel in Hubei. The amount of new daily cases in Yunnan was significant correlated with the number of inbound travelers from Hubei and suspected cases among them. Using Susceptible–Exposed–Infectious–Recovered (SEIR) model analysis, we found that the prevention and control measures dropped the local R0 down to 1.07 in Yunnan province.Conclusions: Our preliminary analysis showed that the proper management of inbound travelers from outbreak areas has a significantly positive effect on the prevention and control of the virus. In the process of resettlement, some effective measures taken by Yunnan province may provide an important reference for preventing the renewed COVID-19 outbreak in other regions.

Phylogenetic Analysis of HIV-1 CRF65_CPX Reveals Yunnan Province Is Still a Source Contributing to the Spread of HIV-1 in China

2015 ◽  
Vol 70 (3) ◽  
pp. e120-e122 ◽  
Author(s):  
Yongjian Liu ◽  
Tao Gui ◽  
Lei Jia ◽  
Lin Li ◽  
Zuoyi Bao ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Yunnan Province ◽  
Hiv 1

Paris lihengiana (Melanthiaceae: Parideae), a new species from Yunnan, China

Phytotaxa ◽  
2019 ◽  
Vol 392 (1) ◽  
pp. 45 ◽  
Author(s):  
ZHUN XU ◽  
NENG WEI ◽  
YING TAN ◽  
SHUAI PENG ◽  
VERONICAH MUTELE NGUMBAU ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Yunnan Province ◽  
Leaf Surface ◽  
Morphological Characters ◽  
Molecular Data ◽  
Abaxial Leaf Surface ◽  
Molecular Phylogenetic ◽  
Plastid Markers ◽  
A New Species

Paris lihengiana (Melanthiaceae), a new species from Yunnan Province, China, is described and illustrated based on evidence from morphological characters and molecular phylogeny. It differs from other species of Paris in its pubescent stem, pedicel and abaxial leaf surface, as well as other characters. Molecular phylogenetic analysis of 33 taxa in Paris was conducted based on nuclear ribosomal ITS and six plastid markers. Paris lihengiana is supported as a new species by both morphological characters and molecular data.

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