The power of resolution of microsatellite markers and assignment tests to determine the geographic origin of cheetah (Acinonyx jubatus) in Southern Africa

2008 ◽  
Vol 73 (6) ◽  
pp. 457-462 ◽  
Author(s):  
Antoinette Kotze ◽  
Karen Ehlers ◽  
D.C. Cilliers ◽  
J.P. Grobler
2000 ◽  
Vol 38 (10) ◽  
pp. 3780-3784 ◽  
Author(s):  
K. L. Smith ◽  
V. DeVos ◽  
H. Bryden ◽  
L. B. Price ◽  
M. E. Hugh-Jones ◽  
...  

The Kruger National Park (KNP), South Africa, has a recorded history of periodic anthrax epidemics causing widespread disease among wild animals. Bacillus anthracis is the causative agent of anthrax, a disease primarily affecting ungulate herbivores. Worldwide there is little diversity among B. anthracis isolates, but examination of variable-number tandem repeat (VNTR) loci has identified six major clones, with the most dissimilar types split into the A and B branches. Both the A and B types are found in southern Africa, giving this region the greatest genetic diversity of B. anthracis worldwide. Consequently, southern Africa has been hypothesized to be the geographic origin of B. anthracis. In this study, we identify the genotypic types of 98 KNP B. anthracis isolates using multiple-locus VNTR analysis. Two major types are evident, the A branch and the B branch. The spatial and temporal distribution of the different genotypes indicates that anthrax epidemic foci are independent, though correlated through environmental cues. Kruger B isolates were found on significantly higher-calcium and higher-pH soils than were Kruger type A. This relationship between genotype and soil chemistry may be due to adaptive differences among divergent anthrax strains. While this association may be simply fortuitous, adaptation of A types to diverse environmental conditions is consistent with their greater geographic dispersal and genetic dissimilarity.


2014 ◽  
Vol 29 (2) ◽  
pp. 556-564 ◽  
Author(s):  
Samrat Mondol ◽  
Vanjulavalli Sridhar ◽  
Prasanjeet Yadav ◽  
Sanjay Gubbi ◽  
Uma Ramakrishnan

2012 ◽  
Vol 10 (2) ◽  
pp. 108-118 ◽  
Author(s):  
O. R. Jiménez ◽  
H. Korpelainen

Nicaragua is located in the Mesoamerican diversity centre for common beans (Phaseolus vulgarisL.). Yet, there is insufficient knowledge of the molecular characteristics of most common bean landraces in Nicaragua. The objectives of the present study were to investigate the genetic diversity of common bean landraces and to identify promising sources of genetic variation for breeding purposes. Two cultivars and 40 landraces never studied before were selected from a collection based on the geographic origin, seed coloration and information provided by farmers. Fourteen microsatellite markers distributed in different linkage groups were analysed. The study revealed that there is a high genetic diversity (mean 8.9 alleles per locus). The populations showed structuring into three groups where seed weight had a strong relationship with population clustering. At least 20% of the populations hold promising allelic variation and potential for good market acceptance that could be maximized in breeding programmes. Additionally, four markers revealed a high correlation with seed length, width and weight, suggesting that marker-assisted selection for these yield-determinant traits could be straightforward. Nonetheless, more marker–trait associations should be addressed in order to enforce this practice.


PeerJ ◽  
2017 ◽  
Vol 5 ◽  
pp. e4096 ◽  
Author(s):  
Florian J. Weise ◽  
Varsha Vijay ◽  
Andrew P. Jacobson ◽  
Rebecca F. Schoonover ◽  
Rosemary J. Groom ◽  
...  

Assessing the numbers and distribution of threatened species is a central challenge in conservation, often made difficult because the species of concern are rare and elusive. For some predators, this may be compounded by their being sparsely distributed over large areas. Such is the case with the cheetahAcinonyx jubatus.The IUCN Red List process solicits comments, is democratic, transparent, widely-used, and has recently assessed the species. Here, we present additional methods to that process and provide quantitative approaches that may afford greater detail and a benchmark against which to compare future assessments. The cheetah poses challenges, but also affords unique opportunities. It is photogenic, allowing the compilation of thousands of crowd-sourced data. It is also persecuted for killing livestock, enabling estimation of local population densities from the numbers persecuted. Documented instances of persecution in areas with known human and livestock density mean that these data can provide an estimate of where the species may or may not occur in areas without observational data. Compilations of extensive telemetry data coupled with nearly 20,000 additional observations from 39 sources show that free-ranging cheetahs were present across approximately 789,700 km2of Namibia, Botswana, South Africa, and Zimbabwe (56%, 22%, 12% and 10% respectively) from 2010 to 2016, with an estimated adult population of 3,577 animals. We identified a further 742,800 km2of potential cheetah habitat within the study region with low human and livestock densities, where another ∼3,250 cheetahs may occur. Unlike many previous estimates, we make the data available and provide explicit information on exactly where cheetahs occur, or are unlikely to occur. We stress the value of gathering data from public sources though these data were mostly from well-visited protected areas. There is a contiguous, transboundary population of cheetah in southern Africa, known to be the largest in the world. We suggest that this population is more threatened than believed due to the concentration of about 55% of free-ranging individuals in two ecoregions. This area overlaps with commercial farmland with high persecution risk; adult cheetahs were removed at the rate of 0.3 individuals per 100 km2per year. Our population estimate for confirmed cheetah presence areas is 11% lower than the IUCN’s current assessment for the same region, lending additional support to the recent call for the up-listing of this species from vulnerable to endangered status.


2014 ◽  
Vol 34 (3) ◽  
pp. 1423-1435 ◽  
Author(s):  
Kassa Semagn ◽  
Cosmos Magorokosho ◽  
Veronica Ogugo ◽  
Dan Makumbi ◽  
Marilyn L. Warburton

2014 ◽  
Vol 44 (7) ◽  
pp. 760-767 ◽  
Author(s):  
Monika Dering ◽  
Andrzej Misiorny ◽  
Władysław Chałupka

We aimed to investigate inter-year variability in mating system and paternity in an experimental Norway spruce (Picea abies (L.) Karst.) clonal seed orchard that was established with five geographically distinct populations. Using five nuclear microsatellite markers, we analysed 1396 progeny of five mother trees representing each of the populations in three successive mast-years. Selfing varied among mother trees, ranging from 0% to 18.3% with a mean of 13.9% in 1994, 10.1% in 2004, and 7.6% in 2006. Considerable background pollination was observed in each of the three studied mast-years and reached ca. 58%. The paternity assignment conducted showed an uneven male contribution to the seed crop, what was partly related to the number of ramets per paternal clone. All provenances contributed to the seed crop, but with different input, and two provenances dominated. Effective pollen dispersal was significantly determined by distance, with 72.2% of the seed crop resulting from crosses at a distance of up to 15 m. Our study indicated that despite considerable differences in the geographic origin of populations, inter-mating between clones from each population was possible, which generally agrees with the expectations related to the establishment of this seed orchard.


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