Single-chain folding of a quenched isotactic polypropylene chain through united atom molecular dynamics simulations

Polymer ◽  
2019 ◽  
Vol 183 ◽  
pp. 121861 ◽  
Author(s):  
Katsumi Hagita ◽  
Susumu Fujiwara
Author(s):  
Asegun Henry ◽  
Gang Chen

We used molecular dynamics simulations to calculate the thermal conductivity of polyethylene chains, by employing the widely used Green-Kubo formula. The simulations use the AIREBO potential and employ periodic boundary conditions to mimic the dynamics of an infinite chain. In this limiting case, we observed that when the simulation domain is large enough the thermal conductivity diverges. The results suggest that single polymer chains intrinsically have high thermal conductivity. Although polymers are generally known to have low thermal conductivity, our observation of divergent thermal conductivity in a single chain suggests that high thermal conductivity polymer materials can be engineered, which would be of interest to a wide range of applications.


2020 ◽  
Author(s):  
G. Giubertoni ◽  
A. Pérez de Alba Ortíz ◽  
F. Bano ◽  
X. Zhang ◽  
R.J. Linhardt ◽  
...  

ABSTRACTThe biological functions of natural polyelectrolytes are strongly influenced by the presence of ions, which bind to the polymer chains and thereby modify their properties. Although the biological impact of such modifications is well-recognized, a detailed molecular picture of the binding process and of the mechanisms that drive the subsequent structural changes in the polymer is lacking. Here, we study the molecular mechanism of the condensation of calcium, a divalent cation, on hyaluronan, a ubiquitous polymer in human tissues. By combining two-dimensional infrared spectroscopy experiments with molecular dynamics simulations, we find that calcium specifically binds to hyaluronan at millimolar concentrations. Because of its large size and charge, the calcium cation can bind simultaneously to the negatively charged carboxylate group and the amide group of adjacent saccharide units. Molecular dynamics simulations and single-chain force spectroscopy measurements provide evidence that the binding of the calcium ions weakens the intra-molecular hydrogen-bond network of hyaluronan, increasing the flexibility of the polymer chain. We also observe that the binding of calcium to hyaluronan saturates at a maximum binding fraction of ~10-15 mol %. This saturation indicates that the binding of Ca2+ strongly reduces the probability of subsequent binding of Ca2+ at neighboring binding sites, possibly as a result of enhanced conformational fluctuations and/or electrostatic repulsion effects. Our findings provide a detailed molecular picture of ion condensation, and reveal the severe effect of a few, selective and localized electrostatic interactions on the rigidity of a polyelectrolyte chain.TOC


RSC Advances ◽  
2016 ◽  
Vol 6 (10) ◽  
pp. 8211-8221 ◽  
Author(s):  
Swagata Pahari ◽  
Sudip Roy

In this work, a single chain conformational analysis of poly[2,2′-(p-phenylene)-5,5′-bibenzimidazole (PBI) and poly(2,5-benzimidazole) (ABPBI) in melt as well as in PA was performed using classical molecular dynamics simulations.


Soft Matter ◽  
2017 ◽  
Vol 13 (37) ◽  
pp. 6430-6438 ◽  
Author(s):  
Maud Formanek ◽  
Angel J. Moreno

By means of molecular dynamics simulations, we investigate the formation of single-chain nanoparticles through intramolecular cross-linking of linear and ring polymers, in the presence of their precursors acting as purely steric crowders in concentrated solution.


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